HL_1ZCI_002

3D structure

PDB id

1ZCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 DIS RNA subtype F- monoclinic form

Experimental method

X-RAY DIFFRACTION

Resolution

1.65 Å

Loop

Sequence

GAAGUGCACAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12078.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1ZCI|1|B|G|7
1ZCI|1|B|A|8
1ZCI|1|B|A|9
1ZCI|1|B|G|10
1ZCI|1|B|U|11
1ZCI|1|B|G|12
1ZCI|1|B|C|13
1ZCI|1|B|A|14
1ZCI|1|B|C|15
1ZCI|1|B|A|16
1ZCI|1|B|C|17

Current chains

Chain B

5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'

Nearby chains

Chain A

5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'