HL_1ZDK_002

3D structure

PDB id

1ZDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

GAUCAC

Length

6 nucleotides

Bulged bases

1ZDK|1|S|U|12||||P_1, 1ZDK|1|S|A|14||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03270.1

Basepair signature

cWW-R

Number of instances in this motif group

18

Unit IDs

1ZDK|1|S|G|10||||P_1
1ZDK|1|S|A|11||||P_1
1ZDK|1|S|U|12||||P_1
1ZDK|1|S|C|13||||P_1
1ZDK|1|S|A|14||||P_1
1ZDK|1|S|C|15||||P_1

Current chains

Chain S

RNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')

Nearby chains

Chain B

PROTEIN (MS2 PROTEIN CAPSID)

Chain C

PROTEIN (MS2 PROTEIN CAPSID)