Motif HL_03270.1 Version HL_03270.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_197 | 4V88 | 0.4901 | 3 | A6 | SSU rRNA | U | 450 | A | 451 | U | 453 | A | 456 | cWW |
| 2 | HL_3JAM_012 | 3JAM | 0.3677 | 3 | 2 | SSU rRNA | U | 449 | A | 450 | U | 452 | A | 455 | cWW |
| 3 | HL_4BTS_121 | 4BTS | 0.3272 | 3 | DA | SSU rRNA | U | 442 | A | 443 | U | 445 | A | 448 | cWW |
| 4 | HL_5A2Q_010 | 5A2Q | 0.2676 | 3 | 2 | SSU rRNA | C | 498 | G | 499 | C | 501 | G | 504 | cWW |
| 5 | HL_7MSF_001 | 7MSF | 0.1557 | 2 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW |
| 6 | HL_7MSF_005 | 7MSF | 0.1557 | 2 | R | RNA (14-mer) | C | 5||||P_P | A | 6||||P_P | C | 8||||P_P | G | 10||||P_P | |
| 7 | HL_1ZDK_002 | 1ZDK | 0.1203 | 2 | S | RNA (19-mer) | G | 10||||P_1 | A | 11||||P_1 | C | 13||||P_1 | C | 15||||P_1 | cWW |
| 8 | HL_1ZDK_006 | 1ZDK | 0.1203 | 2 | S | RNA (19-mer) | G | 10||||P_P | A | 11||||P_P | C | 13||||P_P | C | 15||||P_P | |
| 9 | HL_1ZDJ_006 | 1ZDJ | 0.0967 | 2 | S | RNA (8-mer) | G | 8||||P_P | A | 9||||P_P | C | 11||||P_P | C | 13||||P_P | |
| 10 | HL_1ZDJ_002 | 1ZDJ | 0.0967 | 2 | S | RNA (8-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 11||||P_1 | C | 13||||P_1 | cWW |
| 11 | HL_5MSF_005 | 5MSF | 0.0000 | 2 | R | RNA (18-mer) | G | 7||||P_P | A | 8||||P_P | C | 10||||P_P | C | 12||||P_P | |
| 12 | HL_5MSF_001 | 5MSF | 0.0000 | 2 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 13 | HL_1U1Y_005 | 1U1Y | 0.0674 | 2 | R | RNA (17-mer) | G | 7||||P_P | A | 8||||P_P | C | 10||||P_P | C | 12||||P_P | |
| 14 | HL_1U1Y_001 | 1U1Y | 0.0674 | 2 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 15 | HL_2IZN_005 | 2IZN | 0.1192 | 2 | R | RNA (19-mer) | G | 8||||P_P | A | 9||||P_P | U | 11||||P_P | C | 13||||P_P | |
| 16 | HL_2IZN_001 | 2IZN | 0.1192 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW |
| 17 | HL_3J7P_052 | 3J7P | 0.4310 | 0 | 5 | LSU rRNA | C | 3948 | A | 3949 | U | 3950 | G | 4065 | cWW |
| 18 | HL_4V8P_213 | 4V8P | 0.6620 | 0 | F1 | LSU rRNA | U | 2558 | U | 2559 | U | 2560 | A | 2561 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 8 |
| UAAUUCA | 3 |
| CAACAG | 2 |
| GAUUAC | 2 |
| CGACCCG | 1 |
| CAUG | 1 |
| UUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 8 |
| AAUUC | 3 |
| AACA | 2 |
| AUUA | 2 |
| GACCC | 1 |
| AU | 1 |
| UU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: