HL_1ZL3_001

3D structure

PDB id

1ZL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coupling of active site motions and RNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GU(UD5)CGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: UD5

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_86012.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1ZL3|1|B|G|408
1ZL3|1|B|U|409
1ZL3|1|B|UD5|410
1ZL3|1|B|C|411
1ZL3|1|B|G|412
1ZL3|1|B|A|413
1ZL3|1|B|U|414
1ZL3|1|B|C|415
1ZL3|1|B|C|416

Current chains

Chain B

5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FLO) UP*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3'

Nearby chains

Chain A

tRNA pseudouridine synthase B