Motif HL_86012.1 Version HL_86012.1 of this group appears in releases 3.89 to 4.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1R3E_001 | 1R3E | 0.0000 | 1 | T-loop with unstacked turn | C | RNA (17-mer) | G | 408 | U | 409 | C | 411 | G | 412 | A | 413 | U | 414 | C | 415 | C | 416 | cWW | tWH |
| 2 | HL_1ZL3_001 | 1ZL3 | 0.2394 | 1 | T-loop with unstacked turn | B | RNA (22-mer) | G | 408 | U | 409 | C | 411 | G | 412 | A | 413 | U | 414 | C | 415 | C | 416 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCGAUCC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U(FHU)CGAUC | 1 |
| U(UD5)CGAUC | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with unstacked turn (2)
- Basepair signature
- cWW-tWH-F-F-F-F
- Heat map statistics
- Min 0.24 | Avg 0.12 | Max 0.24
Coloring options: