HL_22TU_001
3D structure
- PDB id
- 22TU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome in complex with DHX29
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUAGGGGUAUG
- Length
- 11 nucleotides
- Bulged bases
- 22TU|1|B4|G|16, 22TU|1|B4|G|17, 22TU|1|B4|G|18, 22TU|1|B4|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_22TU_001 not in the Motif Atlas
- Homologous match to HL_1F7U_001
- Geometric discrepancy: 0.2435
- The information below is about HL_1F7U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55043.2
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
22TU|1|B4|C|12
22TU|1|B4|U|13
22TU|1|B4|A|14
22TU|1|B4|G|15
22TU|1|B4|G|16
22TU|1|B4|G|17
22TU|1|B4|G|18
22TU|1|B4|U|19
22TU|1|B4|A|20
22TU|1|B4|U|21
22TU|1|B4|G|22
Current chains
- Chain B4
- tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
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