HL_22TU_006

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_22TU_006 not in the Motif Atlas

Homologous match to HL_5HR7_006

Geometric discrepancy: 0.1697

The information below is about HL_5HR7_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

138

Unit IDs

22TU|1|C4|G|52
22TU|1|C4|U|53
22TU|1|C4|U|54
22TU|1|C4|C|55
22TU|1|C4|A|56
22TU|1|C4|A|57
22TU|1|C4|A|58
22TU|1|C4|U|59
22TU|1|C4|C|60

Current chains

Chain C4

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA