HL_22TU_064

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

22TU|1|L5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_22TU_064 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.1525

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

22TU|1|L5|C|4417
22TU|1|L5|G|4418
22TU|1|L5|U|4419
22TU|1|L5|U|4420
22TU|1|L5|C|4421
22TU|1|L5|A|4422
22TU|1|L5|U|4423
22TU|1|L5|A|4424
22TU|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain Lm

Ubiquitin-60S ribosomal protein L40