HL_22TU_091

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

22TU|1|S2|A|500, 22TU|1|S2|C|502, 22TU|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_22TU_091 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2404

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

22TU|1|S2|C|498
22TU|1|S2|G|499
22TU|1|S2|A|500
22TU|1|S2|C|501
22TU|1|S2|C|502
22TU|1|S2|C|503
22TU|1|S2|G|504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24