HL_23WI_001

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

23WI|1|5|U|958, 23WI|1|5|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_001 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.185

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

23WI|1|5|PSU|955
23WI|1|5|G|956
23WI|1|5|C|957
23WI|1|5|U|958
23WI|1|5|A|959
23WI|1|5|A|960
23WI|1|5|C|961
23WI|1|5|G|962

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16