RNA 3D Hub //

23WI Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_23WI_0011/5/955:962GNRA
homologous
HL_7A0S_026
HL_34789.6
HL_23WI_0021/5/978:985No text annotation
homologous
HL_7A0S_027
HL_47171.3
HL_23WI_0051/5/1222:1227GNRA
homologous
HL_7A0S_031
HL_34789.6
HL_23WI_0061/5/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_33597.6
HL_23WI_0071/5/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.2
HL_23WI_0081/5/1363:1368GNRA variation
homologous
HL_7A0S_034
HL_34789.6
HL_23WI_0091/5/1389:1398No text annotation
homologous
HL_7A0S_035
HL_77449.3
HL_23WI_0101/5/1450:1461No text annotation
HL_23WI_0111/5/1492:1498No text annotation
homologous
HL_7A0S_037
HL_39243.1
HL_23WI_0131/5/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.5
HL_23WI_0141/5/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.4
HL_23WI_0151/5/1630:1636No text annotation
geometric
HL_8B0X_069
HL_34789.6
HL_23WI_0161/5/1691:1696UNCG
homologous
HL_7A0S_042
HL_61337.6
HL_23WI_0171/5/1727:1733No text annotation
HL_23WI_0181/5/1752:1756No text annotation
homologous
HL_7A0S_044
HL_80709.5
HL_23WI_0191/5/1777:1787No text annotation
geometric
HL_8B0X_073
HL_87681.3
HL_23WI_0201/5/1806:1811GNRA
homologous
HL_7A0S_046
HL_34789.6
HL_23WI_0211/5/1868:1873No text annotation
geometric
HL_6N5P_002
HL_64374.2
HL_23WI_0221/5/1910:1920No text annotation
geometric
HL_9H3G_052
HL_82185.3
HL_23WI_0231/5/1949:1957No text annotation
homologous
HL_7A0S_048
HL_33350.1
HL_23WI_0241/5/2027:2036No text annotation
homologous
HL_7A0S_049
HL_78372.3
HL_23WI_0261/5/2209:2215No text annotation
geometric
HL_8B0X_079
HL_33632.1
HL_23WI_0271/5/2248:2256LSU P loop
homologous
HL_7A0S_052
HL_11974.4
HL_23WI_0281/5/2264:2276No text annotation
homologous
HL_7A0S_053
HL_02042.3
HL_23WI_0291/5/2304:2312No text annotation
geometric
HL_9E6Q_072
HL_02452.3
HL_23WI_0301/5/2324:2331Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.4
HL_23WI_0311/5/2356:2361No text annotation
geometric
HL_8B0X_084
HL_34789.6
HL_23WI_0321/5/2374:2379GNRA
homologous
HL_7A0S_057
HL_34789.6
HL_23WI_0331/5/2404:2413No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_23WI_0341/5/2471:2479No text annotation
homologous
HL_7A0S_059
HL_52011.3
HL_23WI_0351/5/2528:2535GNRA variation
homologous
HL_7A0S_060
HL_02262.1
HL_23WI_0361/5/2551:2557LSU A loop
homologous
HL_7A0S_061
HL_02262.1
HL_23WI_0371/5/2594:2599GNRA
homologous
HL_7A0S_062
HL_34789.6
HL_23WI_0381/5/2658:2663GNRA
homologous
HL_7A0S_063
HL_34789.6
HL_23WI_0391/5/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.4
HL_23WI_0401/5/2745:2759No text annotation
homologous
HL_7A0S_065
HL_53269.4
HL_23WI_0411/5/2795:2801UNCG variation
geometric
HL_6VMY_004
HL_34080.1
HL_23WI_0421/5/2819:2827No text annotation
homologous
HL_7A0S_067
HL_37889.3
HL_23WI_0431/5/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.6
HL_23WI_0441/A/59:68No text annotation
geometric
HL_8B0X_033
HL_35677.5
HL_23WI_0451/A/87:95No text annotation
geometric
HL_8B0X_034
HL_65821.1
HL_23WI_0461/A/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.4
HL_23WI_0471/A/137:142No text annotation
HL_23WI_0481/A/158:168No text annotation
HL_23WI_0491/A/194:201No text annotation
homologous
HL_7A0S_006
HL_02262.1
HL_23WI_0501/A/225:230No text annotation
geometric
HL_8B0X_039
HL_63151.1
HL_23WI_0511/A/246:252No text annotation
homologous
HL_7A0S_008
HL_76371.4
HL_23WI_0521/A/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.5
HL_23WI_0531/A/327:335T-loop with unstacked turn
homologous
HL_7A0S_012
HL_27670.6
HL_23WI_0541/A/382:392No text annotation
homologous
HL_7A0S_013
HL_91503.8
HL_23WI_0551/A/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_23WI_0561/A/462:467GNRA
homologous
HL_7A0S_015
HL_34789.6
HL_23WI_0571/A/487:493GNRA
homologous
HL_7A0S_016
HL_34789.6
HL_23WI_0591/A/566:575T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.6
HL_23WI_0601/A/611:617No text annotation
geometric
HL_2ZZM_002
HL_33487.2
HL_23WI_0611/A/629:634GNRA
homologous
HL_7A0S_020
HL_34789.6
HL_23WI_0621/A/641:647No text annotation
geometric
HL_8B0X_051
HL_07380.1
HL_23WI_0631/A/712:719No text annotation
geometric
HL_8B0X_052
HL_98423.5
HL_23WI_0641/A/744:753No text annotation
homologous
HL_7A0S_022
HL_50204.3
HL_23WI_0651/A/779:785UNCG variation
homologous
HL_7A0S_023
HL_23875.1
HL_23WI_0661/A/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.3
HL_23WI_0671/B/34:48No text annotation
geometric
HL_8B0X_102
HL_97756.4
HL_23WI_0681/B/38:44No text annotation
homologous
HL_4V9F_071
HL_59381.4
HL_23WI_0691/B/86:90No text annotation
geometric
HL_8B0X_098
HL_90436.5
HL_23WI_0701/a/12:22No text annotation
homologous
HL_6CZR_072
NA
HL_23WI_0751/a/259:267GNRA related
homologous
HL_6CZR_077
NA
HL_23WI_0761/a/296:301GNRA
homologous
HL_6CZR_078
NA
HL_23WI_0771/a/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_23WI_0781/a/342:347UNCG
homologous
HL_6CZR_080
NA
HL_23WI_0821/a/522:527GNRA variation
homologous
HL_6CZR_216
NA
HL_23WI_0841/a/689:698No text annotation
homologous
HL_6CZR_086
NA
HL_23WI_0851/a/726:731GNRA
homologous
HL_6CZR_087
NA
HL_23WI_0861/a/786:796No text annotation
homologous
HL_6CZR_088
NA
HL_23WI_0881/a/862:867GNRA
homologous
HL_6CZR_090
NA
HL_23WI_0891/a/897:902GNRA
homologous
HL_6CZR_091
NA
HL_23WI_0901/a/963:972No text annotation
homologous
HL_6CZR_092
NA
HL_23WI_0921/a/1076:1081GNRA
homologous
HL_6CZR_095
NA
HL_23WI_0931/a/1089:1096T-loop related
homologous
HL_6CZR_096
NA
HL_23WI_0951/a/1165:1171GNRA
homologous
HL_6CZR_098
NA
HL_23WI_0961/a/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_23WI_0971/a/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_6CZR_100
NA
HL_23WI_0981/a/1356:1366No text annotation
homologous
HL_6CZR_101
NA
HL_23WI_0991/a/1449:1454No text annotation
geometric
HL_5HR7_005
HL_50006.6
HL_23WI_1001/a/1515:1520GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_23WI_003GNRA with tandem sheared
HL_23WI_004No text annotation
HL_23WI_012No text annotation
HL_23WI_025No text annotation
HL_23WI_058Mini UNCG with extended bulge
HL_23WI_071No text annotation
HL_23WI_072No text annotation
HL_23WI_073No text annotation
HL_23WI_074No text annotation
HL_23WI_079GNRA
HL_23WI_080No text annotation
HL_23WI_081No text annotation
HL_23WI_083No text annotation
HL_23WI_087No text annotation
HL_23WI_091No text annotation
HL_23WI_094No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_23WI_0031/5/898:902,
1/A/875:879		No text annotation
geometric
IL_9H3G_004
IL_87767.4
IL_23WI_0041/5/905:907,
1/A/870:872		Isolated non-canonical cWW pair
homologous
IL_7A0S_030
IL_84227.1
IL_23WI_0051/5/909:912,
1/A/864:868		C-loop
homologous
IL_7A0S_029
IL_16301.3
IL_23WI_0061/5/913:915,
1/A/862:863		Minor groove platform
homologous
IL_7A0S_028
IL_98469.1
IL_23WI_0071/5/915:921,
1/A/856:862		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_8B0X_090
IL_94128.3
IL_23WI_0081/5/926:928,
1/A/850:851		No text annotation
geometric
IL_8B0X_089
IL_15011.5
IL_23WI_0091/5/930:933,
1/A/847:848		No text annotation
geometric
IL_8B0X_088
IL_36175.2
IL_23WI_0101/5/930:934,
1/A/844:848		No text annotation
geometric
IL_8B0X_179
IL_01742.1
IL_23WI_0111/5/933:934,
1/A/844:847		No text annotation
geometric
IL_8B0X_087
IL_79144.1
IL_23WI_0121/5/994:996,
1/5/1159:1160		Single bulged C
homologous
IL_7A0S_032
IL_05642.5
IL_23WI_0131/5/998:1002,
1/5/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_08938.3
IL_23WI_0141/5/1004:1011,
1/5/1150:1151		SSU/LSU pseudoknot
homologous
IL_7A0S_034
IL_46868.2
IL_23WI_0151/5/1011:1013,
1/5/1149:1150		Single bulged U
homologous
IL_7A0S_035
IL_97561.7
IL_23WI_0161/5/1018:1024,
1/5/1140:1144		Kink-turn related
homologous
IL_7A0S_036
IL_57188.6
IL_23WI_0171/5/1024:1030,
1/5/1124:1140		No text annotation
geometric
IL_8B0X_101
IL_50715.4
IL_23WI_0181/5/1031:1034,
1/5/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7A0S_038
IL_76400.2
IL_23WI_0191/5/1038:1041,
1/5/1114:1117		Tandem non-canonical cWW pairs
geometric
IL_8B0X_103
IL_15225.4
IL_23WI_0201/5/1043:1051,
1/5/1108:1112		Kink-turn
geometric
IL_4V9F_042
IL_99692.4
IL_23WI_0221/5/1196:1198,
1/5/1247:1250		Isolated cWS basepair
homologous
IL_7A0S_041
IL_84227.1
IL_23WI_0231/5/1202:1206,
1/5/1240:1243		No text annotation
IL_23WI_0241/5/1208:1215,
1/5/1234:1238		Kink-turn
homologous
IL_7A0S_043
IL_90775.3
IL_23WI_0251/5/1262:1269,
1/5/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.5
IL_23WI_0261/5/1310:1313,
1/5/1603:1604		No text annotation
geometric
IL_9E6Q_008
IL_74641.4
IL_23WI_0271/5/1319:1323,
1/5/1331:1333		C-loop
homologous
IL_7A0S_047
IL_06671.3
IL_23WI_0281/5/1351:1353,
1/5/1379:1380		No text annotation
geometric
IL_8GLP_054
IL_15011.5
IL_23WI_0291/5/1351:1355,
1/5/1376:1380		No text annotation
geometric
IL_8B0X_111
IL_89021.4
IL_23WI_0301/5/1353:1355,
1/5/1376:1379		No text annotation
IL_23WI_0311/5/1357:1361,
1/5/1370:1374		tSH-tWH-tHS
homologous
IL_7A0S_049
IL_05821.3
IL_23WI_0321/5/1415:1416,
1/5/1582:1587		No text annotation
IL_23WI_0331/5/1417:1421,
1/5/1577:1581		UAA/GAN
homologous
IL_7A0S_051
IL_08938.3
IL_23WI_0341/5/1432:1435,
1/5/1557:1561		No text annotation
geometric
IL_8B0X_115
IL_60418.1
IL_23WI_0351/5/1437:1440,
1/5/1551:1555		tSH-tHW
homologous
IL_7A0S_053
IL_74317.1
IL_23WI_0361/5/1468:1471,
1/5/1520:1524		No text annotation
geometric
IL_8B0X_118
IL_68574.5
IL_23WI_0371/5/1474:1478,
1/5/1513:1517		Double sheared with near cWW
homologous
IL_7A0S_056
IL_87767.4
IL_23WI_0381/5/1481:1482,
1/5/1507:1510		No text annotation
geometric
IL_8B0X_120
IL_52564.1
IL_23WI_0391/5/1489:1491,
1/5/1499:1500		Single bulged A
geometric
IL_4V9F_098
IL_14190.4
IL_23WI_0401/5/1526:1529,
1/5/1542:1546		No text annotation
geometric
IL_8B0X_122
IL_45790.3
IL_23WI_0411/5/1651:1656,
1/5/2004:2006		No text annotation
homologous
IL_7A0S_059
IL_12566.6
IL_23WI_0421/5/1663:1665,
1/5/1995:1997		Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.3
IL_23WI_0431/5/1666:1669,
1/5/1993:1994		No text annotation
geometric
IL_9E6Q_063
IL_74641.4
IL_23WI_0441/5/1666:1674,
1/5/1990:1994		No text annotation
geometric
IL_8B0X_180
IL_80252.3
IL_23WI_0451/5/1669:1674,
1/5/1990:1993		Intercalated tWH
homologous
IL_7A0S_062
IL_28217.3
IL_23WI_0461/5/1686:1691,
1/5/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_20700.3
IL_23WI_0471/5/1712:1718,
1/5/1742:1746		6x5 Sarcin-Ricin; G-bulge
geometric
IL_8B0X_128
IL_82100.1
IL_23WI_0481/5/1720:1724,
1/5/1736:1740		No text annotation
geometric
IL_8B0X_129
IL_70744.1
IL_23WI_0491/5/1770:1771,
1/5/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_14190.4
IL_23WI_0501/5/1798:1804,
1/5/1813:1821		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_23WI_0511/5/1837:1840,
1/5/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_55206.3
IL_23WI_0521/5/1841:1842,
1/5/1898:1901		Major groove intercalation
homologous
IL_7A0S_067
IL_77710.2
IL_23WI_0531/5/1846:1849,
1/5/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_7A0S_068
IL_73108.4
IL_23WI_0541/5/1851:1860,
1/5/1882:1891		No text annotation
IL_23WI_0551/5/1864:1867,
1/5/1874:1878		No text annotation
geometric
IL_8B0X_136
IL_77691.7
IL_23WI_0561/5/1933:1934,
1/5/1964:1967		No text annotation
geometric
IL_8B0X_137
IL_24886.4
IL_23WI_0571/5/1934:1945,
1/5/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_23WI_0581/5/2050:2052,
1/5/2617:2618		Major groove platform
homologous
IL_7A0S_073
IL_48076.10
IL_23WI_0591/5/2054:2056,
1/5/2612:2615		No text annotation
geometric
IL_8B0X_140
IL_80025.3
IL_23WI_0601/5/2067:2069,
1/5/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.7
IL_23WI_0611/5/2070:2071,
1/5/2438:2441		Minor groove platform
homologous
IL_7A0S_076
IL_98469.1
IL_23WI_0621/5/2081:2083,
1/5/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_87316.4
IL_23WI_0631/5/2085:2087,
1/5/2232:2234		Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_71625.5
IL_23WI_0661/5/2202:2204,
1/5/2220:2221		No text annotation
geometric
IL_8B0X_146
IL_97561.7
IL_23WI_0671/5/2350:2353,
1/5/2364:2367		Double sheared
homologous
IL_7A0S_081
IL_58355.4
IL_23WI_0681/5/2401:2403,
1/5/2414:2415		No text annotation
geometric
IL_9H3G_006
IL_97561.7
IL_23WI_0691/5/2453:2454,
1/5/2498:2500		Single stack bend
homologous
IL_7A0S_083
IL_15011.5
IL_23WI_0701/5/2454:2455,
1/5/2496:2498		Major groove platform
homologous
IL_7A0S_084
IL_48076.10
IL_23WI_0711/5/2457:2459,
1/5/2493:2494		Major groove platform
homologous
IL_7A0S_085
IL_48076.10
IL_23WI_0721/5/2459:2461,
1/5/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_36931.4
IL_23WI_0731/5/2466:2470,
1/5/2480:2484		Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.4
IL_23WI_0741/5/2507:2508,
1/5/2580:2582		Major groove platform
homologous
IL_7A0S_088
IL_46637.4
IL_23WI_0751/5/2510:2512,
1/5/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_30722.1
IL_23WI_0761/5/2512:2513,
1/5/2571:2574		Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.4
IL_23WI_0771/5/2522:2523,
1/5/2540:2543		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.3
IL_23WI_0781/5/2591:2592,
1/5/2601:2603		No text annotation
geometric
IL_8GLP_154
IL_14190.4
IL_23WI_0791/5/2636:2640,
1/5/2774:2782		tSH-tHS-tHW
homologous
IL_7A0S_093
IL_04638.4
IL_23WI_0801/5/2652:2658,
1/5/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.6
IL_23WI_0811/5/2680:2684,
1/5/2725:2727		C-loop
homologous
IL_7A0S_095
IL_63596.14
IL_23WI_0821/5/2687:2691,
1/5/2718:2722		UAA/GAN related, with intercalation
homologous
IL_7A0S_096
IL_82016.1
IL_23WI_0831/5/2695:2696,
1/5/2711:2714		Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.4
IL_23WI_0841/5/2737:2742,
1/5/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_23WI_0851/5/2806:2811,
1/5/2889:2892		No text annotation
IL_23WI_0861/5/2838:2839,
1/5/2878:2880		Major groove intercalation
homologous
IL_7A0S_099
IL_28408.4
IL_23WI_0871/5/2843:2846,
1/5/2870:2874		No text annotation
geometric
IL_8B0X_169
IL_60988.4
IL_23WI_0881/5/2847:2852,
1/5/2865:2869		No text annotation
homologous
IL_7A0S_101
IL_48489.3
IL_23WI_0891/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.3
IL_23WI_0901/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_7A0S_002
IL_14190.4
IL_23WI_0911/A/43:44,
1/A/434:436		Minor groove platform
homologous
IL_7A0S_003
IL_98469.1
IL_23WI_0921/A/81:85,
1/A/97:105		Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_23WI_0931/A/183:184,
1/A/212:214		Single stack bend
homologous
IL_7A0S_005
IL_15011.5
IL_23WI_0941/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.5
IL_23WI_0951/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
geometric
IL_8B0X_071
IL_02666.3
IL_23WI_0961/A/269:271,
1/A/366:370		No text annotation
IL_23WI_0971/A/274:281,
1/A/359:363		No text annotation
IL_23WI_0981/A/293:295,
1/A/343:347		No text annotation
geometric
IL_8B0X_074
IL_76658.1
IL_23WI_0991/A/481:484,
1/A/496:509		No text annotation
geometric
IL_8B0X_075
IL_44923.3
IL_23WI_1001/A/536:539,
1/A/554:557		Double sheared
geometric
IL_8B0X_076
IL_58355.4
IL_23WI_1011/A/564:566,
1/A/575:577		Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_01334.1
IL_23WI_1021/A/606:610,
1/A/618:622		AAA cross-strand stack
homologous
IL_7A0S_013
IL_66798.3
IL_23WI_1031/A/672:674,
1/A/806:808		Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.6
IL_23WI_1041/A/674:678,
1/A/799:806		tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.3
IL_23WI_1051/A/697:698,
1/A/763:765		Single bulged A
homologous
IL_7A0S_016
IL_14190.4
IL_23WI_1061/A/702:703,
1/A/728:730		Single bulged G
homologous
IL_7A0S_017
IL_28408.4
IL_23WI_1071/A/703:707,
1/A/724:728		No text annotation
geometric
IL_8B0X_083
IL_15190.4
IL_23WI_1081/A/738:740,
1/A/757:758		No text annotation
geometric
IL_8B0X_084
IL_48076.10
IL_23WI_1091/A/775:777,
1/A/787:791		No text annotation
geometric
IL_9E6Q_032
IL_89509.3
IL_23WI_1101/B/17:18,
1/B/65:67		Major groove intercalation
homologous
IL_4V9F_101
IL_14190.4
IL_23WI_1111/B/23:28,
1/B/56:60		No text annotation
geometric
IL_8B0X_172
IL_18472.5
IL_23WI_1121/B/30:31,
1/B/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.4
IL_23WI_1131/B/34:38,
1/B/44:48		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.14
IL_23WI_1141/B/71:79,
1/B/97:105		Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_71138.1
IL_23WI_1151/a/30:32,
1/a/552:553		Single bulged G
homologous
IL_6CZR_113
NA
IL_23WI_1171/a/47:52,
1/a/359:361		No text annotation
geometric
IL_8B0X_003
IL_32983.3
IL_23WI_1231/a/128:131,
1/a/231:233		No text annotation
IL_23WI_1241/a/132:136,
1/a/227:230		Minor groove platform related
homologous
IL_6CZR_120
NA
IL_23WI_1281/a/242:247,
1/a/277:284		Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_23WI_1291/a/249:252,
1/a/274:275		No text annotation
homologous
IL_6CZR_405
NA
IL_23WI_1301/a/292:293,
1/a/304:308		C-loop
homologous
IL_6CZR_125
NA
IL_23WI_1391/a/515:521,
1/a/528:536		Kink-turn related
homologous
IL_6CZR_133
NA
IL_23WI_1401/a/569:575,
1/a/880:881		No text annotation
homologous
IL_6CZR_134
NA
IL_23WI_1411/a/580:584,
1/a/757:761		tSH-tWH-tHS
homologous
IL_6CZR_135
NA
IL_23WI_1421/a/594:596,
1/a/644:645		Major groove platform
homologous
IL_6CZR_407
NA
IL_23WI_1431/a/597:598,
1/a/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_6CZR_137
NA
IL_23WI_1441/a/605:612,
1/a/628:633		No text annotation
homologous
IL_6CZR_408
NA
IL_23WI_1451/a/654:655,
1/a/751:754		No text annotation
geometric
IL_8B0X_030
IL_74641.4
IL_23WI_1461/a/659:660,
1/a/745:747		No text annotation
geometric
IL_8B0X_031
IL_15011.5
IL_23WI_1471/a/662:666,
1/a/740:743		Tandem non-canonical cWW pairs
homologous
IL_6CZR_141
NA
IL_23WI_1481/a/673:677,
1/a/713:717		Triple non-canonical cWW pairs
homologous
IL_6CZR_409
NA
IL_23WI_1491/a/684:688,
1/a/699:706		Kink-turn
geometric
IL_8B0X_034
IL_71972.2
IL_23WI_1501/a/774:778,
1/a/804:805		Left turn
homologous
IL_6CZR_144
NA
IL_23WI_1511/a/779:783,
1/a/799:803		tSH-tWH-tHS
homologous
IL_6CZR_145
NA
IL_23WI_1521/a/887:894,
1/a/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_6CZR_364
NA
IL_23WI_1531/a/922:923,
1/a/1393:1395		Single bulged A
homologous
IL_6CZR_147
NA
IL_23WI_1541/a/925:927,
1/a/1390:1391		Single bulged G
homologous
IL_6CZR_148
NA
IL_23WI_1551/a/933:935,
1/a/1380:1384		No text annotation
homologous
IL_6CZR_410
NA
IL_23WI_1561/a/953:954,
1/a/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_23WI_1571/a/993:997,
1/a/1044:1045		No text annotation
geometric
IL_8B0X_042
IL_49794.1
IL_23WI_1601/a/1048:1050,
1/a/1208:1209		No text annotation
homologous
IL_6CZR_152
NA
IL_23WI_1611/a/1052:1056,
1/a/1204:1206		No text annotation
homologous
IL_6CZR_154
NA
IL_23WI_1621/a/1057:1058,
1/a/1199:1203		Minor groove platform
homologous
IL_6CZR_155
NA
IL_23WI_1631/a/1060:1061,
1/a/1195:1197		Single bulged U
homologous
IL_6CZR_156
NA
IL_23WI_1641/a/1061:1063,
1/a/1193:1195		Isolated non-canonical cWW pair
homologous
IL_6CZR_157
NA
IL_23WI_1651/a/1124:1128,
1/a/1144:1149		No text annotation
geometric
IL_8B0X_050
IL_38603.1
IL_23WI_1671/a/1158:1161,
1/a/1175:1181		No text annotation
geometric
IL_8B0X_052
IL_32376.2
IL_23WI_1681/a/1247:1253,
1/a/1284:1290		No text annotation
homologous
IL_6CZR_160
NA
IL_23WI_1691/a/1255:1258,
1/a/1277:1282		180 degree turn
homologous
IL_6CZR_161
NA
IL_23WI_1701/a/1259:1263,
1/a/1272:1276		No text annotation
geometric
IL_8B0X_055
IL_87767.4
IL_23WI_1711/a/1303:1308,
1/a/1329:1334		No text annotation
homologous
IL_6CZR_164
NA
IL_23WI_1721/a/1399:1401,
1/a/1501:1504		No text annotation
homologous
IL_6CZR_165
NA
IL_23WI_1731/a/1401:1404,
1/a/1497:1501		No text annotation
homologous
IL_6CZR_368
NA
IL_23WI_1741/a/1405:1407,
1/a/1494:1496		Isolated non-canonical cWW pair
geometric
IL_8GLP_276
IL_01003.6
IL_23WI_1751/a/1407:1409,
1/a/1491:1494		No text annotation
geometric
IL_9H3G_236
IL_29925.3
IL_23WI_1761/a/1412:1414,
1/a/1486:1488		Isolated non-canonical cWW pair
homologous
IL_6CZR_411
NA
IL_23WI_1771/a/1416:1419,
1/a/1481:1484		Double sheared
homologous
IL_6CZR_169
NA
IL_23WI_1781/a/1430:1435,
1/a/1466:1470		No text annotation
geometric
IL_8B0X_062
IL_47352.3
IL_23WI_1791/a/1440:1442,
1/a/1460:1461		No text annotation
geometric
IL_8B0X_063
IL_41261.1
IL_23WI_1801/a/1445:1448,
1/a/1455:1457		No text annotation
geometric
IL_8B0X_064
IL_05502.2

Problematic loops

#loop idProblemSequence
IL_23WI_001No text annotation
IL_23WI_002No text annotation
IL_23WI_021No text annotation
IL_23WI_064No text annotation
IL_23WI_065Isolated cWS basepair
IL_23WI_116Single bulged A
IL_23WI_118Minor groove platform
IL_23WI_119Multiple bulged bases
IL_23WI_120No text annotation
IL_23WI_121No text annotation
IL_23WI_122No text annotation
IL_23WI_125Isolated cWH basepair
IL_23WI_126tWH-tWH-tHW-tHW
IL_23WI_127No text annotation
IL_23WI_131Single bulged U
IL_23WI_132C-loop
IL_23WI_133Single bulged G
IL_23WI_134No text annotation
IL_23WI_135No text annotation
IL_23WI_136tWW-tWH-tHS
IL_23WI_137No text annotation
IL_23WI_138SSU/LSU pseudoknot
IL_23WI_158Single stack bend
IL_23WI_159No text annotation
IL_23WI_166Minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_23WI_0011/5/1298:1303,
1/5/1625:1627,
1/5/1639:1642		No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_23WI_0021/5/1306:1309,
1/5/1605:1611,
1/5/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_23WI_0031/5/1344:1349,
1/5/1382:1385,
1/5/1402:1403		No text annotation
J3_23WI_0041/5/1424:1429,
1/5/1564:1565,
1/5/1568:1574		No text annotation
homologous
J3_7A0S_019
J3_34864.3
J3_23WI_0051/5/2091:2093,
1/5/2196:2200,
1/5/2223:2228		No text annotation
homologous
J3_7A0S_009
J3_17460.1
J3_23WI_0061/5/2282:2284,
1/5/2384:2395,
1/5/2421:2427		No text annotation
homologous
J3_7A0S_020
J3_04772.3
J3_23WI_0071/5/2295:2299,
1/5/2317:2323,
1/5/2332:2337		No text annotation
J3_23WI_0081/5/2517:2520,
1/5/2545:2547,
1/5/2561:2567		No text annotation
homologous
J3_7A0S_011
J3_32601.6
J3_23WI_0091/5/2789:2791,
1/5/2805:2806,
1/5/2892:2894		No text annotation
J3_23WI_0101/5/2812:2815,
1/5/2831:2836,
1/5/2882:2888		No text annotation
J3_23WI_0111/A/30:31,
1/A/474:481,
1/A/509:510		No text annotation
geometric
J3_8B0X_014
J3_68715.3
J3_23WI_0121/A/30:31,
1/A/474:484,
1/A/496:510		No text annotation
homologous
J3_7A0S_015
J3_17917.3
J3_23WI_0131/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_7A0S_016
J3_07616.3
J3_23WI_0141/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_7A0S_002
J3_01004.3
J3_23WI_0151/A/297:301,
1/A/316:325,
1/A/337:341		No text annotation
geometric
J3_8B0X_034
J3_77124.1
J3_23WI_0161/A/683:689,
1/A/773:775,
1/A/791:794		No text annotation
homologous
J3_7A0S_004
J3_46658.3
J3_23WI_0171/A/698:700,
1/A/732:736,
1/A/760:763		No text annotation
homologous
J3_7A0S_005
J3_69816.3
J3_23WI_0181/B/10:16,
1/B/68:70,
1/B/106:110		No text annotation
J3_23WI_0191/a/46:47,
1/a/361:367,
1/a/393:395		No text annotation
geometric
J3_8B0X_001
J3_58657.3
J3_23WI_0201/a/46:52,
1/a/359:367,
1/a/393:395		No text annotation
homologous
J3_6CZR_058
NA
J3_23WI_0211/a/586:588,
1/a/651:654,
1/a/754:755		No text annotation
geometric
J3_8B0X_002
J3_01633.3
J3_23WI_0221/a/586:588,
1/a/651:655,
1/a/751:755		No text annotation
homologous
J3_6CZR_077
NA
J3_23WI_0231/a/672:673,
1/a/717:725,
1/a/732:734		No text annotation
homologous
J3_6CZR_017
NA
J3_23WI_0241/a/826:829,
1/a/857:861,
1/a/868:874		No text annotation
homologous
J3_6CZR_018
NA
J3_23WI_0251/a/936:939,
1/a/1344:1350,
1/a/1372:1379		No text annotation
homologous
J3_6CZR_061
NA
J3_23WI_0261/a/943:946,
1/a/1235:1237,
1/a/1337:1340		No text annotation
homologous
J3_6CZR_019
NA
J3_23WI_0271/a/955:962,
1/a/973:984,
1/a/1221:1225		No text annotation
geometric
J3_8B0X_007
J3_88451.3
J3_23WI_0281/a/990:993,
1/a/1045:1047,
1/a/1210:1215		No text annotation
geometric
J3_4LFB_005
J3_84394.1
J3_23WI_0291/a/990:997,
1/a/1044:1047,
1/a/1210:1215		No text annotation
homologous
J3_6CZR_063
NA
J3_23WI_0301/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193		No text annotation
homologous
J3_6CZR_023
NA
J3_23WI_0311/a/1073:1074,
1/a/1083:1086,
1/a/1099:1102		No text annotation
homologous
J3_6CZR_079
NA
J3_23WI_0321/a/1116:1118,
1/a/1155:1158,
1/a/1181:1184		No text annotation
geometric
J3_8B0X_012
J3_82365.7
J3_23WI_0331/a/1116:1118,
1/a/1155:1161,
1/a/1175:1184		No text annotation
homologous
J3_6CZR_025
NA
J3_23WI_0341/a/1237:1241,
1/a/1296:1303,
1/a/1334:1337		No text annotation
homologous
J3_6CZR_026
NA
J4_23WI_0011/5/1270:1276,
1/5/1294:1295,
1/5/1645:1648,
1/5/2009:2010		No text annotation
homologous
J4_7A0S_004
J4_19484.1
J4_23WI_0021/5/1310:1314,
1/5/1338:1343,
1/5/1404:1405,
1/5/1597:1604		No text annotation
J4_23WI_0031/5/1313:1314,
1/5/1338:1343,
1/5/1404:1405,
1/5/1597:1603		No text annotation
homologous
J4_7A0S_006
J4_48150.2
J4_23WI_0041/5/1444:1445,
1/5/1466:1467,
1/5/1525:1526,
1/5/1546:1547		No text annotation
J4_23WI_0051/5/1772:1776,
1/5/1788:1792,
1/5/1827:1830,
1/5/1975:1979		No text annotation
homologous
J4_7A0S_008
J4_61477.6
J4_23WI_0061/5/1833:1835,
1/5/1905:1906,
1/5/1924:1933,
1/5/1967:1972		No text annotation
J4_23WI_0071/5/2285:2289,
1/5/2343:2347,
1/5/2370:2372,
1/5/2381:2383		No text annotation
homologous
J4_7A0S_009
J4_98139.1
J4_23WI_0081/5/2643:2646,
1/5/2674:2676,
1/5/2731:2735,
1/5/2769:2771		No text annotation
J4_23WI_0091/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424		No text annotation
homologous
J4_7A0S_001
J4_94698.3
J4_23WI_0101/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656		No text annotation
J4_23WI_0111/a/115:122,
1/a/239:240,
1/a/286:289,
1/a/311:312		No text annotation
homologous
J4_6CZR_027
NA
J4_23WI_0131/a/575:577,
1/a/764:769,
1/a/810:821,
1/a/879:880		No text annotation
homologous
J4_6CZR_013
NA
J5_23WI_0011/5/1195:1196,
1/5/1250:1256,
1/A/584:589,
1/A/668:671,
1/A/809:812		No text annotation
homologous
J5_7A0S_004
J5_74302.6
J5_23WI_0021/5/1261:1262,
1/5/2017:2018,
1/A/531:533,
1/A/560:564,
1/A/577:579		No text annotation
J5_23WI_0031/5/1674:1682,
1/5/1706:1707,
1/5/1751:1752,
1/5/1756:1764,
1/5/1988:1990		No text annotation
homologous
J5_7A0S_005
J5_99177.3
J5_23WI_0041/5/2057:2064,
1/5/2446:2453,
1/5/2500:2507,
1/5/2582:2588,
1/5/2606:2611		No text annotation
J5_23WI_0051/5/2074:2077,
1/5/2243:2246,
1/5/2258:2259,
1/5/2281:2282,
1/5/2427:2435		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_23WI_0061/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178		No text annotation
J5_23WI_0091/a/58:61,
1/a/106:113,
1/a/314:316,
1/a/337:339,
1/a/350:354		No text annotation
homologous
J5_6CZR_021
NA
J6_23WI_0011/5/2074:2077,
1/5/2243:2246,
1/5/2258:2259,
1/5/2281:2284,
1/5/2384:2395,
1/5/2421:2435		No text annotation
J6_23WI_0021/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433		No text annotation
J7_23WI_0011/5/940:946,
1/5/971:976,
1/5/987:991,
1/5/1163:1164,
1/5/1185:1190,
1/A/817:822,
1/A/835:838		No text annotation
J7_23WI_0021/5/2018:2023,
1/5/2040:2043,
1/5/2625:2630,
1/5/2788:2789,
1/5/2894:2895,
1/A/8:15,
1/A/525:531		No text annotation

Problematic loops

#loop idProblemSequence
J4_23WI_012No text annotation
J5_23WI_007No text annotation
J5_23WI_008No text annotation

Coloring options:
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