HL_23WI_005
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGUGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_23WI_005 not in the Motif Atlas
- Homologous match to HL_7A0S_031
- Geometric discrepancy: 0.1543
- The information below is about HL_7A0S_031
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
23WI|1|5|U|1222
23WI|1|5|G|1223
23WI|1|5|U|1224
23WI|1|5|G|1225
23WI|1|5|A|1226
23WI|1|5|G|1227
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
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