HL_23WI_008
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_23WI_008 not in the Motif Atlas
- Homologous match to HL_7A0S_034
- Geometric discrepancy: 0.2294
- The information below is about HL_7A0S_034
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
23WI|1|5|C|1363
23WI|1|5|G|1364
23WI|1|5|A|1365
23WI|1|5|A|1366
23WI|1|5|A|1367
23WI|1|5|G|1368
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- 50S ribosomal protein L28
Coloring options: