HL_23WI_009

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

23WI|1|5|U|1396, 23WI|1|5|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_009 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.383

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

23WI|1|5|G|1389
23WI|1|5|U|1390
23WI|1|5|U|1391
23WI|1|5|A|1392
23WI|1|5|A|1393
23WI|1|5|U|1394
23WI|1|5|A|1395
23WI|1|5|U|1396
23WI|1|5|U|1397
23WI|1|5|C|1398

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain T

50S ribosomal protein L23