HL_23WI_020

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

23WI|1|5|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_020 not in the Motif Atlas

Homologous match to HL_7A0S_046

Geometric discrepancy: 0.5889

The information below is about HL_7A0S_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

23WI|1|5|C|1806
23WI|1|5|G|1807
23WI|1|5|A|1808
23WI|1|5|A|1809
23WI|1|5|A|1810
23WI|1|5|G|1811

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2

Chain X

50S ribosomal protein L28