HL_23WI_026

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

23WI|1|5|A|2211, 23WI|1|5|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_026 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.0833

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33632.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

23WI|1|5|G|2209
23WI|1|5|U|2210
23WI|1|5|A|2211
23WI|1|5|A|2212
23WI|1|5|U|2213
23WI|1|5|C|2214
23WI|1|5|C|2215

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2