HL_23WI_029

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_029 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.1059

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.3

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

23WI|1|5|G|2304
23WI|1|5|U|2305
23WI|1|5|C|2306
23WI|1|5|G|2307
23WI|1|5|G|2308
23WI|1|5|A|2309
23WI|1|5|C|2310
23WI|1|5|A|2311
23WI|1|5|U|2312

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain F

50S ribosomal protein L5