HL_23WI_042

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

23WI|1|5|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_042 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1406

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

23WI|1|5|G|2819
23WI|1|5|A|2820
23WI|1|5|A|2821
23WI|1|5|G|2822
23WI|1|5|A|2823
23WI|1|5|C|2824
23WI|1|5|G|2825
23WI|1|5|A|2826
23WI|1|5|C|2827

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17