HL_23WI_057

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

23WI|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_057 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.2145

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

23WI|1|A|C|487
23WI|1|A|G|488
23WI|1|A|G|489
23WI|1|A|C|490
23WI|1|A|G|491
23WI|1|A|A|492
23WI|1|A|G|493

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain S

50S ribosomal protein L22