HL_23WI_064
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- U(1MG)(PSU)(5MC)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 23WI|1|A|5MC|747, 23WI|1|A|A|751, 23WI|1|A|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_23WI_064 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.135
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.3
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
23WI|1|A|U|744
23WI|1|A|1MG|745
23WI|1|A|PSU|746
23WI|1|A|5MC|747
23WI|1|A|G|748
23WI|1|A|A|749
23WI|1|A|A|750
23WI|1|A|A|751
23WI|1|A|A|752
23WI|1|A|A|753
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain 2
- 50S ribosomal protein L34
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain S
- 50S ribosomal protein L22
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