HL_23WI_069

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

23WI|1|B|U|87, 23WI|1|B|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_069 not in the Motif Atlas

Geometric match to HL_8B0X_098

Geometric discrepancy: 0.1143

The information below is about HL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

23WI|1|B|G|86
23WI|1|B|U|87
23WI|1|B|C|88
23WI|1|B|U|89
23WI|1|B|C|90

Current chains

Chain B

30S ribosomal protein S

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L16