HL_23WI_075

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

23WI|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_075 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2897

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

23WI|1|a|G|259
23WI|1|a|G|260
23WI|1|a|U|261
23WI|1|a|A|262
23WI|1|a|A|263
23WI|1|a|C|264
23WI|1|a|G|265
23WI|1|a|G|266
23WI|1|a|C|267

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20