HL_23WI_078

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

23WI|1|a|A|344, 23WI|1|a|C|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_078 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.2336

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

23WI|1|a|C|342
23WI|1|a|U|343
23WI|1|a|A|344
23WI|1|a|C|345
23WI|1|a|G|346
23WI|1|a|G|347

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain P

50S ribosomal protein L19