HL_23WI_089

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_089 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.1158

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

23WI|1|a|C|897
23WI|1|a|G|898
23WI|1|a|C|899
23WI|1|a|A|900
23WI|1|a|A|901
23WI|1|a|G|902

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain C

Large ribosomal subunit protein uL2