HL_23WI_090
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 23WI|1|a|U|965, 23WI|1|a|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_23WI_090 not in the Motif Atlas
- Homologous match to HL_6CZR_092
- Geometric discrepancy: 0.3066
- The information below is about HL_6CZR_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
23WI|1|a|G|963
23WI|1|a|A|964
23WI|1|a|U|965
23WI|1|a|2MG|966
23WI|1|a|5MC|967
23WI|1|a|A|968
23WI|1|a|A|969
23WI|1|a|C|970
23WI|1|a|G|971
23WI|1|a|C|972
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: