HL_23WI_095

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

23WI|1|a|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23WI_095 not in the Motif Atlas

Homologous match to HL_6CZR_098

Geometric discrepancy: 0.4252

The information below is about HL_6CZR_098

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

23WI|1|a|U|1165
23WI|1|a|G|1166
23WI|1|a|A|1167
23WI|1|a|U|1168
23WI|1|a|A|1169
23WI|1|a|A|1170
23WI|1|a|A|1171

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain u

Small ribosomal subunit protein bS21