HL_28LN_001

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

28LN|1|A2|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_001 not in the Motif Atlas

Homologous match to HL_9PN5_077

Geometric discrepancy: 0.0985

The information below is about HL_9PN5_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.4

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

28LN|1|A2|G|7
28LN|1|A2|U|8
28LN|1|A2|U|9
28LN|1|A2|G|10
28LN|1|A2|A|11
28LN|1|A2|U|12
28LN|1|A2|C|13
28LN|1|A2|C|14
28LN|1|A2|U|15
28LN|1|A2|G|16
28LN|1|A2|C|17

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AX

Small ribosomal subunit protein uS12