28LN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_28LN_001 | 1/A2/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.4 | |
| HL_28LN_009 | 1/A2/441:452 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_28LN_018 | 1/A2/957:966 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_28LN_019 | 1/A2/994:999 | No text annotation | homologous HL_9PN5_096 HL_34789.7 | |
| HL_28LN_020 | 1/A2/1054:1064 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_28LN_023 | 1/A2/1178:1183 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_28LN_024 | 1/A2/1245:1254 | No text annotation | homologous HL_9PN5_101 HL_97521.4 | |
| HL_28LN_026 | 1/A2/1353:1358 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_28LN_034 | 1/A2/1847:1852 | No text annotation | homologous HL_9H3G_108 HL_34789.7 | |
| HL_28LN_038 | 1/B5/37:44 | No text annotation | homologous HL_8GLP_001 HL_02262.2 | |
| HL_28LN_039 | 1/B5/68:73 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_28LN_040 | 1/B5/89:95 | No text annotation | homologous HL_9PN5_003 HL_76371.5 | |
| HL_28LN_042 | 1/B5/204:211 | No text annotation | homologous HL_9H3G_009 HL_13999.6 | |
| HL_28LN_043 | 1/B5/222:226 | No text annotation | geometric HL_8GLP_006 HL_75660.11 | |
| HL_28LN_044 | 1/B5/230:238 | No text annotation | homologous HL_8GLP_007 HL_27670.7 | |
| HL_28LN_045 | 1/B5/289:298 | No text annotation | homologous HL_9AXU_008 HL_63894.5 | |
| HL_28LN_046 | 1/B5/314:323 | No text annotation | homologous HL_8GLP_009 HL_00911.5 | |
| HL_28LN_047 | 1/B5/368:373 | No text annotation | homologous HL_8GLP_010 HL_34789.7 | |
| HL_28LN_048 | 1/B5/393:398 | No text annotation | homologous HL_8GLP_118 HL_34789.7 | |
| HL_28LN_050 | 1/B5/1316:1325 | T-loop with 2 stacked bulged bases | homologous HL_9AXU_013 HL_33597.8 | |
| HL_28LN_051 | 1/B5/1363:1372 | No text annotation | ||
| HL_28LN_052 | 1/B5/1388:1393 | No text annotation | homologous HL_9AXU_015 HL_34789.7 | |
| HL_28LN_054 | 1/B5/1435:1447 | No text annotation | homologous HL_8GLP_020 HL_20751.3 | |
| HL_28LN_057 | 1/B5/1592:1601 | No text annotation | homologous HL_9AXU_018 HL_50204.4 | |
| HL_28LN_058 | 1/B5/1626:1634 | No text annotation | homologous HL_8GLP_024 HL_28253.2 | |
| HL_28LN_059 | 1/B5/1674:1679 | No text annotation | homologous HL_9PN5_022 HL_27530.4 | |
| HL_28LN_061 | 1/B5/1813:1823 | No text annotation | ||
| HL_28LN_062 | 1/B5/1863:1869 | No text annotation | homologous HL_9AXU_023 HL_34789.7 | |
| HL_28LN_063 | 1/B5/1885:1892 | No text annotation | homologous HL_9H3G_032 HL_47171.4 | |
| HL_28LN_066 | 1/B5/2256:2260 | No text annotation | homologous HL_8GLP_031 HL_12111.1 | |
| HL_28LN_067 | 1/B5/2316:2321 | No text annotation | homologous HL_8GLP_032 HL_34789.7 | |
| HL_28LN_068 | 1/B5/2375:2383 | No text annotation | homologous HL_9H3G_035 HL_33597.8 | |
| HL_28LN_069 | 1/B5/2419:2425 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_28LN_070 | 1/B5/2457:2462 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_28LN_072 | 1/B5/2522:2531 | No text annotation | homologous HL_8GLP_038 HL_77449.4 | |
| HL_28LN_074 | 1/B5/2577:2582 | No text annotation | homologous HL_8GLP_040 HL_34789.7 | |
| HL_28LN_075 | 1/B5/2623:2631 | No text annotation | homologous HL_9PN5_036 HL_22758.4 | |
| HL_28LN_076 | 1/B5/2663:2669 | No text annotation | homologous HL_8GLP_042 HL_52776.1 | |
| HL_28LN_077 | 1/B5/2704:2709 | No text annotation | ||
| HL_28LN_078 | 1/B5/2737:2741 | No text annotation | homologous HL_8GLP_044 HL_90436.6 | |
| HL_28LN_079 | 1/B5/2791:2798 | No text annotation | homologous HL_9H3G_045 HL_28592.5 | |
| HL_28LN_080 | 1/B5/2809:2815 | No text annotation | homologous HL_9PN5_041 HL_34789.7 | |
| HL_28LN_081 | 1/B5/2871:2876 | No text annotation | homologous HL_9PN5_042 HL_61337.7 | |
| HL_28LN_082 | 1/B5/3613:3617 | No text annotation | homologous HL_8GLP_049 NA | |
| HL_28LN_083 | 1/B5/3638:3648 | No text annotation | homologous HL_9H3G_049 HL_87681.4 | |
| HL_28LN_084 | 1/B5/3667:3673 | No text annotation | homologous HL_8GLP_051 HL_34789.7 | |
| HL_28LN_085 | 1/B5/3723:3728 | No text annotation | homologous HL_9AXU_044 HL_34789.7 | |
| HL_28LN_087 | 1/B5/3795:3803 | No text annotation | homologous HL_8GLP_054 HL_77449.4 | |
| HL_28LN_088 | 1/B5/3872:3881 | No text annotation | homologous HL_9AXU_047 HL_78372.4 | |
| HL_28LN_091 | 1/B5/4192:4200 | No text annotation | homologous HL_9PN5_052 HL_11974.5 | |
| HL_28LN_092 | 1/B5/4209:4221 | No text annotation | homologous HL_8GLP_060 HL_02042.4 | |
| HL_28LN_093 | 1/B5/4249:4257 | No text annotation | ||
| HL_28LN_094 | 1/B5/4269:4276 | No text annotation | homologous HL_8GLP_062 HL_52651.5 | |
| HL_28LN_095 | 1/B5/4300:4308 | No text annotation | homologous HL_8GLP_063 HL_15296.4 | |
| HL_28LN_096 | 1/B5/4320:4325 | No text annotation | homologous HL_8GLP_064 HL_34789.7 | |
| HL_28LN_097 | 1/B5/4351:4361 | No text annotation | homologous HL_8GLP_065 HL_14856.1 | |
| HL_28LN_099 | 1/B5/4473:4480 | No text annotation | homologous HL_9H3G_063 HL_02262.2 | |
| HL_28LN_100 | 1/B5/4496:4502 | LSU A loop | homologous HL_8GLP_068 HL_02262.2 | |
| HL_28LN_101 | 1/B5/4539:4544 | No text annotation | homologous HL_8GLP_069 HL_34789.7 | |
| HL_28LN_102 | 1/B5/4602:4607 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_28LN_103 | 1/B5/4645:4650 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_28LN_104 | 1/B5/4687:4701 | No text annotation | homologous HL_9PN5_065 HL_53269.5 | |
| HL_28LN_105 | 1/B5/4906:4913 | No text annotation | homologous HL_8GLP_074 HL_31089.4 | |
| HL_28LN_106 | 1/B5/4974:4982 | No text annotation | homologous HL_8GLP_075 HL_37889.4 | |
| HL_28LN_108 | 1/B7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.3 | |
| HL_28LN_109 | 1/B7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.5 | |
| HL_28LN_110 | 1/B7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_28LN_111 | 1/B8/47:56 | No text annotation | homologous HL_9AXU_071 HL_17803.4 | |
| HL_28LN_112 | 1/B8/68:90 | No text annotation | homologous HL_9H3G_002 NA | |
| HL_28LN_113 | 1/B8/107:112 | No text annotation | geometric HL_5AMQ_001 HL_89167.5 | |
| HL_28LN_114 | 1/B8/122:128 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_28LN_002 | No text annotation | ||
| HL_28LN_003 | No text annotation | ||
| HL_28LN_004 | No text annotation | ||
| HL_28LN_005 | No text annotation | ||
| HL_28LN_006 | No text annotation | ||
| HL_28LN_007 | No text annotation | ||
| HL_28LN_008 | No text annotation | ||
| HL_28LN_010 | No text annotation | ||
| HL_28LN_011 | No text annotation | ||
| HL_28LN_012 | No text annotation | ||
| HL_28LN_013 | No text annotation | ||
| HL_28LN_014 | No text annotation | ||
| HL_28LN_015 | No text annotation | ||
| HL_28LN_016 | No text annotation | ||
| HL_28LN_017 | No text annotation | ||
| HL_28LN_021 | No text annotation | ||
| HL_28LN_022 | No text annotation | ||
| HL_28LN_025 | No text annotation | ||
| HL_28LN_027 | No text annotation | ||
| HL_28LN_028 | No text annotation | ||
| HL_28LN_029 | No text annotation | ||
| HL_28LN_030 | No text annotation | ||
| HL_28LN_031 | No text annotation | ||
| HL_28LN_032 | No text annotation | ||
| HL_28LN_033 | No text annotation | ||
| HL_28LN_035 | No text annotation | ||
| HL_28LN_036 | No text annotation | ||
| HL_28LN_037 | T-loop with 2 stacked bulged bases | ||
| HL_28LN_041 | No text annotation | ||
| HL_28LN_049 | No text annotation | ||
| HL_28LN_053 | No text annotation | ||
| HL_28LN_055 | No text annotation | ||
| HL_28LN_056 | No text annotation | ||
| HL_28LN_060 | No text annotation | ||
| HL_28LN_064 | No text annotation | ||
| HL_28LN_065 | No text annotation | ||
| HL_28LN_071 | No text annotation | ||
| HL_28LN_073 | No text annotation | ||
| HL_28LN_086 | No text annotation | ||
| HL_28LN_089 | No text annotation | ||
| HL_28LN_090 | No text annotation | ||
| HL_28LN_098 | No text annotation | ||
| HL_28LN_107 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_28LN_016 | 1/A2/359:364, 1/A2/396:403 | Kink-turn with non-sequential stacking | homologous IL_9PN5_159 IL_46174.7 | |
| IL_28LN_017 | 1/A2/366:371, 1/A2/393:394 | No text annotation | geometric IL_8GLP_211 IL_01372.4 | |
| IL_28LN_030 | 1/A2/663:665, 1/A2/1162:1164 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_28LN_031 | 1/A2/665:671, 1/A2/1161:1162 | No text annotation | homologous IL_9H3G_189 IL_20847.4 | |
| IL_28LN_032 | 1/A2/673:675, 1/A2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_28LN_033 | 1/A2/676:680, 1/A2/1025:1029 | No text annotation | homologous IL_9H3G_191 IL_05821.4 | |
| IL_28LN_045 | 1/A2/922:923, 1/A2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8GLP_235 IL_74641.5 | |
| IL_28LN_046 | 1/A2/925:926, 1/A2/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_97561.8 | |
| IL_28LN_047 | 1/A2/928:931, 1/A2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.5 | |
| IL_28LN_048 | 1/A2/931:935, 1/A2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_28LN_049 | 1/A2/942:945, 1/A2/981:984 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_28LN_050 | 1/A2/952:956, 1/A2/967:974 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_28LN_051 | 1/A2/1042:1047, 1/A2/1071:1073 | No text annotation | homologous IL_9H3G_203 IL_31690.2 | |
| IL_28LN_052 | 1/A2/1047:1051, 1/A2/1067:1071 | No text annotation | homologous IL_9PN5_190 IL_05821.4 | |
| IL_28LN_053 | 1/A2/1091:1093, 1/A2/1152:1158 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_28LN_054 | 1/A2/1098:1103, 1/A2/1129:1134 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.3 | |
| IL_28LN_056 | 1/A2/1168:1175, 1/A2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_28LN_057 | 1/A2/1203:1204, 1/A2/1694:1696 | Single bulged A | homologous IL_9H3G_210 IL_14190.5 | |
| IL_28LN_058 | 1/A2/1206:1208, 1/A2/1691:1692 | Single bulged G | homologous IL_9H3G_211 IL_28408.5 | |
| IL_28LN_059 | 1/A2/1214:1217, 1/A2/1681:1685 | No text annotation | homologous IL_9PN5_197 IL_63596.15 | |
| IL_28LN_072 | 1/A2/1347:1349, 1/A2/1380:1382 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_28LN_083 | 1/A2/1700:1702, 1/A2/1833:1836 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_28LN_084 | 1/A2/1702:1705, 1/A2/1829:1833 | No text annotation | homologous IL_9PN5_221 IL_25873.5 | |
| IL_28LN_097 | 1/B5/6:7, 1/B8/149:151 | No text annotation | ||
| IL_28LN_098 | 1/B5/12:14, 1/B8/143:144 | Single bulged U | homologous IL_8GLP_002 IL_97561.8 | |
| IL_28LN_099 | 1/B5/16:18, 1/B8/139:141 | Isolated non-canonical cWW pair | homologous IL_8GLP_003 IL_19025.1 | |
| IL_28LN_100 | 1/B5/26:27, 1/B5/55:57 | Single stack bend | homologous IL_8GLP_004 IL_15011.6 | |
| IL_28LN_101 | 1/B5/30:37, 1/B5/44:52 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_8GLP_005 IL_93502.4 | |
| IL_28LN_102 | 1/B5/81:88, 1/B5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8GLP_006 IL_62167.6 | |
| IL_28LN_103 | 1/B5/118:122, 1/B5/147:153 | Kink-turn with embedded cWW pair | homologous IL_8GLP_287 IL_65996.1 | |
| IL_28LN_104 | 1/B5/125:126, 1/B5/142:144 | Single bulged C | homologous IL_8GLP_009 IL_05642.6 | |
| IL_28LN_108 | 1/B5/195:196, 1/B5/244:246 | Stack outside cWW | geometric IL_7L0Z_004 IL_77710.2 | |
| IL_28LN_109 | 1/B5/199:201, 1/B5/214:215 | Single bulged U | homologous IL_8GLP_016 IL_97561.8 | |
| IL_28LN_110 | 1/B5/339:342, 1/B8/32:33 | Minor groove platform | homologous IL_8GLP_017 IL_26092.1 | |
| IL_28LN_111 | 1/B5/348:350, 1/B8/25:26 | Single bulged A | homologous IL_8GLP_018 IL_14190.5 | |
| IL_28LN_112 | 1/B5/387:390, 1/B5/401:414 | No text annotation | geometric IL_8GLP_019 IL_44923.4 | |
| IL_28LN_113 | 1/B5/415:421, 1/B8/13:19 | No text annotation | homologous IL_8GLP_021 IL_22311.4 | |
| IL_28LN_114 | 1/B5/443:446, 1/B5/1299:1303 | No text annotation | homologous IL_8GLP_022 IL_32983.4 | |
| IL_28LN_115 | 1/B5/448:450, 1/B5/1296:1297 | Single bulged C | geometric IL_8GLP_083 IL_05642.6 | |
| IL_28LN_117 | 1/B5/462:464, 1/B5/691:693 | Isolated non-canonical cWW pair | homologous IL_8GLP_025 IL_01003.7 | |
| IL_28LN_118 | 1/B5/466:472, 1/B5/682:689 | No text annotation | homologous IL_8GLP_026 NA | |
| IL_28LN_126 | 1/B5/709:710, 1/B5/1285:1287 | Single bulged G | homologous IL_8GLP_034 IL_28408.5 | |
| IL_28LN_127 | 1/B5/723:724, 1/B5/941:944 | No text annotation | homologous IL_8GLP_035 IL_09092.2 | |
| IL_28LN_128 | 1/B5/727:731, 1/B5/937:938 | No text annotation | homologous IL_8GLP_036 IL_75501.2 | |
| IL_28LN_129 | 1/B5/732:735, 1/B5/927:936 | No text annotation | ||
| IL_28LN_132 | 1/B5/745:752, 1/B5/910:918 | No text annotation | homologous IL_8GLP_040 IL_25001.3 | |
| IL_28LN_133 | 1/B5/1072:1073, 1/B5/1236:1238 | Single bulged A | homologous IL_8GLP_041 IL_14190.5 | |
| IL_28LN_139 | 1/B5/1356:1359, 1/B5/1378:1381 | No text annotation | homologous IL_8GLP_049 NA | |
| IL_28LN_140 | 1/B5/1356:1360, 1/B5/1375:1381 | No text annotation | homologous IL_8GLP_288 NA | |
| IL_28LN_141 | 1/B5/1359:1360, 1/B5/1375:1378 | No text annotation | homologous IL_8GLP_050 IL_73464.3 | |
| IL_28LN_142 | 1/B5/1424:1428, 1/B5/1454:1459 | No text annotation | homologous IL_8GLP_051 IL_47352.3 | |
| IL_28LN_143 | 1/B5/1430:1433, 1/B5/1449:1452 | Double sheared | homologous IL_8GLP_052 IL_58355.5 | |
| IL_28LN_144 | 1/B5/1466:1467, 1/B5/1495:1497 | Single bulged A | homologous IL_8GLP_053 IL_14190.5 | |
| IL_28LN_145 | 1/B5/1473:1477, 1/B5/1486:1489 | Tandem non-canonical cWW pairs | geometric IL_6GYV_002 IL_15225.5 | |
| IL_28LN_147 | 1/B5/1519:1521, 1/B5/1654:1656 | Isolated non-canonical cWW pair | homologous IL_8GLP_289 IL_01003.7 | |
| IL_28LN_148 | 1/B5/1521:1525, 1/B5/1647:1654 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_28LN_149 | 1/B5/1544:1545, 1/B5/1611:1613 | Single bulged A | homologous IL_8GLP_057 IL_14190.5 | |
| IL_28LN_150 | 1/B5/1549:1550, 1/B5/1575:1577 | Single bulged G | homologous IL_8GLP_058 IL_28408.5 | |
| IL_28LN_151 | 1/B5/1550:1554, 1/B5/1571:1575 | No text annotation | homologous IL_8GLP_059 IL_15190.5 | |
| IL_28LN_152 | 1/B5/1585:1588, 1/B5/1604:1606 | No text annotation | homologous IL_9PN5_031 IL_36931.5 | |
| IL_28LN_153 | 1/B5/1589:1591, 1/B5/1602:1603 | Single bulged U | homologous IL_8GLP_061 IL_97561.8 | |
| IL_28LN_154 | 1/B5/1623:1625, 1/B5/1635:1639 | No text annotation | homologous IL_8GLP_062 IL_89509.4 | |
| IL_28LN_155 | 1/B5/1670:1672, 1/B5/1681:1683 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_28LN_156 | 1/B5/1685:1687, 1/B5/1847:1850 | No text annotation | homologous IL_8GLP_064 IL_16315.2 | |
| IL_28LN_157 | 1/B5/1693:1720, 1/B5/1840:1841 | No text annotation | ||
| IL_28LN_158 | 1/B5/1722:1724, 1/B5/1837:1838 | Single bulged G | homologous IL_9H3G_043 IL_28408.5 | |
| IL_28LN_159 | 1/B5/1731:1736, 1/B5/1791:1796 | No text annotation | homologous IL_8GLP_291 IL_46203.1 | |
| IL_28LN_160 | 1/B5/1736:1737, 1/B5/1789:1791 | Minor groove platform | homologous IL_9H3G_045 IL_37129.1 | |
| IL_28LN_161 | 1/B5/1738:1743, 1/B5/1785:1788 | No text annotation | homologous IL_9AXU_039 IL_16301.4 | |
| IL_28LN_162 | 1/B5/1745:1748, 1/B5/1780:1783 | Tandem non-canonical cWW pairs; U in syn | homologous IL_9PN5_040 IL_71194.5 | |
| IL_28LN_166 | 1/B5/1857:1859, 1/B5/1873:1875 | Isolated non-canonical cWW pair | homologous IL_9AXU_044 IL_01003.7 | |
| IL_28LN_167 | 1/B5/1904:1908, 1/B5/2066:2070 | UAA/GAN | homologous IL_9AXU_045 IL_08938.4 | |
| IL_28LN_168 | 1/B5/1910:1919, 1/B5/2062:2064 | No text annotation | ||
| IL_28LN_169 | 1/B5/1919:1921, 1/B5/2061:2062 | No text annotation | ||
| IL_28LN_170 | 1/B5/1925:1932, 1/B5/2052:2057 | No text annotation | homologous IL_8GLP_079 IL_39054.4 | |
| IL_28LN_171 | 1/B5/1932:1943, 1/B5/2037:2052 | No text annotation | homologous IL_9PN5_050 IL_34501.4 | |
| IL_28LN_172 | 1/B5/1945:1947, 1/B5/2034:2035 | Single bulged U | homologous IL_9H3G_059 IL_97561.8 | |
| IL_28LN_177 | 1/B5/2082:2084, 1/B5/2271:2272 | Single bulged C | geometric IL_8GLP_023 IL_05642.6 | |
| IL_28LN_178 | 1/B5/2289:2291, 1/B5/2341:2344 | No text annotation | homologous IL_9PN5_056 IL_84227.2 | |
| IL_28LN_179 | 1/B5/2298:2300, 1/B5/2333:2334 | Single bulged A | homologous IL_8GLP_085 IL_14190.5 | |
| IL_28LN_180 | 1/B5/2301:2308, 1/B5/2328:2332 | Kink-turn | homologous IL_8GLP_086 IL_90775.4 | |
| IL_28LN_181 | 1/B5/2311:2313, 1/B5/2324:2325 | Single bulged A | homologous IL_8GLP_087 IL_14190.5 | |
| IL_28LN_182 | 1/B5/2357:2363, 1/B5/3857:3862 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8GLP_300 IL_02666.4 | |
| IL_28LN_183 | 1/B5/2405:2408, 1/B5/2782:2783 | Major groove platform; stack outside cWW | geometric IL_8GLP_089 IL_74641.5 | |
| IL_28LN_184 | 1/B5/2414:2418, 1/B5/2426:2428 | No text annotation | homologous IL_9AXU_059 IL_06671.4 | |
| IL_28LN_185 | 1/B5/2445:2449, 1/B5/2508:2513 | UAA/GAN | homologous IL_8GLP_091 IL_08938.4 | |
| IL_28LN_187 | 1/B5/2541:2546, 1/B5/2771:2773 | No text annotation | homologous IL_9AXU_061 IL_75527.5 | |
| IL_28LN_188 | 1/B5/2548:2549, 1/B5/2767:2769 | Single bulged U | homologous IL_8GLP_095 IL_97561.8 | |
| IL_28LN_189 | 1/B5/2588:2592, 1/B5/2751:2755 | No text annotation | homologous IL_8GLP_096 IL_15190.5 | |
| IL_28LN_190 | 1/B5/2612:2614, 1/B5/2721:2725 | No text annotation | geometric IL_5DO4_004 IL_77718.1 | |
| IL_28LN_191 | 1/B5/2645:2647, 1/B5/2684:2687 | No text annotation | homologous IL_8GLP_099 IL_87316.5 | |
| IL_28LN_192 | 1/B5/2650:2652, 1/B5/2680:2681 | Single bulged G | homologous IL_8GLP_100 IL_28408.5 | |
| IL_28LN_193 | 1/B5/2655:2661, 1/B5/2671:2677 | No text annotation | homologous IL_8GLP_101 IL_93476.4 | |
| IL_28LN_194 | 1/B5/2703:2704, 1/B5/2709:2711 | No text annotation | ||
| IL_28LN_195 | 1/B5/2831:2837, 1/B5/3849:3852 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_28LN_196 | 1/B5/2843:2845, 1/B5/3841:3843 | No text annotation | homologous IL_9AXU_071 IL_10432.4 | |
| IL_28LN_197 | 1/B5/2846:2849, 1/B5/3839:3840 | Major groove platform; stack outside cWW | geometric IL_9E6Q_063 IL_74641.5 | |
| IL_28LN_198 | 1/B5/2846:2854, 1/B5/3836:3840 | No text annotation | geometric IL_9PN5_075 IL_80252.4 | |
| IL_28LN_199 | 1/B5/2849:2854, 1/B5/3836:3839 | No text annotation | homologous IL_9PN5_076 IL_28217.4 | |
| IL_28LN_200 | 1/B5/2866:2871, 1/B5/2876:2882 | No text annotation | homologous IL_8GLP_108 IL_20700.4 | |
| IL_28LN_201 | 1/B5/2888:2890, 1/B5/3609:3611 | Isolated non-canonical cWW pair | homologous IL_9PN5_078 IL_01003.7 | |
| IL_28LN_202 | 1/B5/2894:2896, 1/B5/3601:3605 | No text annotation | geometric IL_9NLN_001 IL_24466.1 | |
| IL_28LN_203 | 1/B5/3631:3632, 1/B5/3826:3828 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_28LN_204 | 1/B5/3659:3664, 1/B5/3676:3683 | No text annotation | homologous IL_8GLP_114 IL_14684.4 | |
| IL_28LN_205 | 1/B5/3699:3702, 1/B5/3748:3749 | No text annotation | homologous IL_9AXU_080 IL_55206.4 | |
| IL_28LN_206 | 1/B5/3703:3704, 1/B5/3744:3747 | No text annotation | homologous IL_8GLP_117 IL_71421.6 | |
| IL_28LN_207 | 1/B5/3707:3720, 1/B5/3731:3741 | No text annotation | homologous IL_9AXU_082 NA | |
| IL_28LN_208 | 1/B5/3779:3780, 1/B5/3810:3813 | No text annotation | geometric IL_9H3G_098 IL_24886.5 | |
| IL_28LN_209 | 1/B5/3780:3791, 1/B5/3807:3810 | No text annotation | homologous IL_8GLP_307 IL_84014.4 | |
| IL_28LN_210 | 1/B5/3894:3897, 1/B5/4562:4564 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_28LN_211 | 1/B5/3899:3901, 1/B5/4557:4560 | No text annotation | homologous IL_9AXU_086 IL_80025.4 | |
| IL_28LN_212 | 1/B5/3912:3914, 1/B5/4387:4388 | Single bulged U | homologous IL_9AXU_087 IL_97561.8 | |
| IL_28LN_213 | 1/B5/3915:3916, 1/B5/4383:4386 | Minor groove platform | homologous IL_9H3G_103 IL_37129.1 | |
| IL_28LN_214 | 1/B5/3926:3928, 1/B5/4180:4183 | No text annotation | homologous IL_9AXU_089 IL_87316.5 | |
| IL_28LN_216 | 1/B5/4081:4087, 1/B5/4160:4163 | No text annotation | homologous IL_8GLP_135 IL_52092.4 | |
| IL_28LN_219 | 1/B5/4190:4191, 1/B5/4201:4203 | Single bulged A | geometric IL_1CSL_002 IL_14190.5 | |
| IL_28LN_220 | 1/B5/4242:4244, 1/B5/4262:4266 | No text annotation | homologous IL_9AXU_092 IL_14250.4 | |
| IL_28LN_221 | 1/B5/4290:4292, 1/B5/4316:4317 | Single bulged A | geometric IL_9AXU_093 IL_14190.5 | |
| IL_28LN_222 | 1/B5/4294:4297, 1/B5/4311:4314 | Tandem non-canonical cWW pairs | homologous IL_9AXU_094 IL_15225.5 | |
| IL_28LN_223 | 1/B5/4346:4349, 1/B5/4363:4364 | No text annotation | homologous IL_9H3G_115 IL_57267.1 | |
| IL_28LN_224 | 1/B5/4399:4404, 1/B5/4438:4443 | No text annotation | homologous IL_8GLP_142 NA | |
| IL_28LN_225 | 1/B5/4404:4406, 1/B5/4434:4438 | No text annotation | homologous IL_9H3G_119 IL_36931.5 | |
| IL_28LN_226 | 1/B5/4411:4415, 1/B5/4425:4429 | No text annotation | homologous IL_9PN5_101 IL_87767.5 | |
| IL_28LN_227 | 1/B5/4452:4453, 1/B5/4525:4527 | No text annotation | homologous IL_8GLP_146 IL_46637.5 | |
| IL_28LN_228 | 1/B5/4455:4457, 1/B5/4519:4523 | No text annotation | homologous IL_9H3G_122 IL_30722.2 | |
| IL_28LN_229 | 1/B5/4457:4458, 1/B5/4516:4519 | No text annotation | homologous IL_8GLP_148 IL_44609.5 | |
| IL_28LN_230 | 1/B5/4465:4467, 1/B5/4488:4490 | Isolated non-canonical cWW pair | geometric IL_8GLP_149 IL_01003.7 | |
| IL_28LN_231 | 1/B5/4465:4469, 1/B5/4484:4490 | No text annotation | geometric IL_8GLP_315 IL_56912.1 | |
| IL_28LN_232 | 1/B5/4467:4469, 1/B5/4484:4488 | No text annotation | homologous IL_9H3G_124 IL_09353.2 | |
| IL_28LN_233 | 1/B5/4494:4496, 1/B5/4502:4504 | Isolated non-canonical cWW pair | homologous IL_8GLP_152 IL_01003.7 | |
| IL_28LN_234 | 1/B5/4536:4537, 1/B5/4546:4548 | Single bulged A | homologous IL_9AXU_106 IL_14190.5 | |
| IL_28LN_235 | 1/B5/4579:4581, 1/B5/4720:4722 | Isolated cWH basepair | homologous IL_8GLP_157 IL_10892.5 | |
| IL_28LN_236 | 1/B5/4581:4584, 1/B5/4716:4720 | No text annotation | homologous IL_8GLP_158 IL_46211.1 | |
| IL_28LN_237 | 1/B5/4589:4591, 1/B5/4617:4619 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.6 | |
| IL_28LN_238 | 1/B5/4595:4602, 1/B5/4607:4613 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9AXU_109 IL_62167.6 | |
| IL_28LN_239 | 1/B5/4623:4628, 1/B5/4668:4672 | No text annotation | homologous IL_8GLP_317 IL_31690.2 | |
| IL_28LN_240 | 1/B5/4631:4636, 1/B5/4661:4665 | No text annotation | homologous IL_8GLP_318 IL_43276.1 | |
| IL_28LN_241 | 1/B5/4637:4639, 1/B5/4658:4660 | Isolated cWH basepair | homologous IL_8GLP_162 IL_10892.5 | |
| IL_28LN_242 | 1/B5/4640:4641, 1/B5/4654:4657 | No text annotation | homologous IL_8GLP_163 IL_44609.5 | |
| IL_28LN_243 | 1/B5/4680:4684, 1/B5/4704:4708 | UAA/GAN | homologous IL_9H3G_133 IL_08938.4 | |
| IL_28LN_246 | 1/B5/4748:4750, 1/B5/4947:4950 | No text annotation | homologous IL_8GLP_167 IL_31990.1 | |
| IL_28LN_247 | 1/B5/4754:4756, 1/B5/4876:4878 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.7 | |
| IL_28LN_248 | 1/B5/4756:4764, 1/B5/4868:4876 | No text annotation | ||
| IL_28LN_253 | 1/B5/4991:4993, 1/B5/5056:5058 | Isolated non-canonical cWW pair | homologous IL_8GLP_173 IL_01003.7 | |
| IL_28LN_254 | 1/B5/4995:4996, 1/B5/5052:5054 | Single bulged C | homologous IL_8GLP_174 IL_05642.6 | |
| IL_28LN_255 | 1/B5/4999:5001, 1/B5/5044:5049 | No text annotation | homologous IL_9H3G_143 IL_00086.4 | |
| IL_28LN_256 | 1/B5/5002:5008, 1/B5/5038:5043 | No text annotation | homologous IL_8GLP_176 NA | |
| IL_28LN_257 | 1/B5/5011:5013, 1/B5/5034:5035 | Single bulged C | homologous IL_8GLP_178 IL_05642.6 | |
| IL_28LN_258 | 1/B5/5013:5016, 1/B5/5031:5034 | Double sheared | homologous IL_8GLP_179 IL_58355.5 | |
| IL_28LN_259 | 1/B7/15:16, 1/B7/62:64 | Single bulged C | geometric IL_3W3S_001 IL_05642.6 | |
| IL_28LN_260 | 1/B7/21:27, 1/B7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.3 | |
| IL_28LN_261 | 1/B7/28:29, 1/B7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.5 | |
| IL_28LN_262 | 1/B7/32:36, 1/B7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_28LN_263 | 1/B7/72:78, 1/B7/98:103 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_106 IL_02666.4 | |
| IL_28LN_264 | 1/B7/79:81, 1/B7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_81485.1 | |
| IL_28LN_265 | 1/B7/82:85, 1/B7/92:94 | Isolated non-canonical cWW pair | geometric IL_8QYX_171 IL_01003.7 | |
| IL_28LN_266 | 1/B8/64:66, 1/B8/92:95 | No text annotation | homologous IL_8GLP_187 IL_30722.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_28LN_001 | Isolated non-canonical cWW pair | ||
| IL_28LN_002 | Tandem non-canonical cWW pairs | ||
| IL_28LN_003 | No text annotation | ||
| IL_28LN_004 | Minor groove platform | ||
| IL_28LN_005 | No text annotation | ||
| IL_28LN_006 | No text annotation | ||
| IL_28LN_007 | No text annotation | ||
| IL_28LN_008 | No text annotation | ||
| IL_28LN_009 | No text annotation | ||
| IL_28LN_010 | No text annotation | ||
| IL_28LN_011 | Isolated cWH basepair | ||
| IL_28LN_012 | No text annotation | ||
| IL_28LN_013 | No text annotation | ||
| IL_28LN_014 | Single bulged A | ||
| IL_28LN_015 | No text annotation | ||
| IL_28LN_018 | No text annotation | ||
| IL_28LN_019 | Isolated cWH basepair | ||
| IL_28LN_020 | Single bulged U | ||
| IL_28LN_021 | No text annotation | ||
| IL_28LN_022 | Single bulged G | ||
| IL_28LN_023 | Single bulged A | ||
| IL_28LN_024 | Isolated non-canonical cWW pair | ||
| IL_28LN_025 | No text annotation | ||
| IL_28LN_026 | Tandem non-canonical cWW pairs | ||
| IL_28LN_027 | No text annotation | ||
| IL_28LN_028 | Single bulged U | ||
| IL_28LN_029 | Kink-turn related | ||
| IL_28LN_034 | No text annotation | ||
| IL_28LN_035 | Isolated non-canonical cWW pair | ||
| IL_28LN_036 | Isolated non-canonical cWW pair | ||
| IL_28LN_037 | Isolated non-canonical cWW pair | ||
| IL_28LN_038 | No text annotation | ||
| IL_28LN_039 | Minor groove platform | ||
| IL_28LN_040 | Isolated non-canonical cWW pair | ||
| IL_28LN_041 | No text annotation | ||
| IL_28LN_042 | No text annotation | ||
| IL_28LN_043 | Isolated non-canonical cWW pair | ||
| IL_28LN_044 | No text annotation | ||
| IL_28LN_055 | Single stack bend | ||
| IL_28LN_060 | Isolated non-canonical cWW pair | ||
| IL_28LN_061 | Minor groove platform | ||
| IL_28LN_062 | Isolated non-canonical cWW pair | ||
| IL_28LN_063 | No text annotation | ||
| IL_28LN_064 | No text annotation | ||
| IL_28LN_065 | No text annotation | ||
| IL_28LN_066 | No text annotation | ||
| IL_28LN_067 | Single bulged U | ||
| IL_28LN_068 | No text annotation | ||
| IL_28LN_069 | No text annotation | ||
| IL_28LN_070 | No text annotation | ||
| IL_28LN_071 | Single bulged A | ||
| IL_28LN_073 | Minor groove platform | ||
| IL_28LN_074 | No text annotation | ||
| IL_28LN_075 | No text annotation | ||
| IL_28LN_076 | No text annotation | ||
| IL_28LN_077 | Single bulged G | ||
| IL_28LN_078 | Isolated non-canonical cWW pair | ||
| IL_28LN_079 | No text annotation | ||
| IL_28LN_080 | No text annotation | ||
| IL_28LN_081 | No text annotation | ||
| IL_28LN_082 | No text annotation | ||
| IL_28LN_085 | Isolated non-canonical cWW pair | ||
| IL_28LN_086 | No text annotation | ||
| IL_28LN_087 | Isolated non-canonical cWW pair | ||
| IL_28LN_088 | No text annotation | ||
| IL_28LN_089 | Single bulged U | ||
| IL_28LN_090 | No text annotation | ||
| IL_28LN_091 | Double sheared | ||
| IL_28LN_092 | Isolated non-canonical cWW pair | ||
| IL_28LN_093 | No text annotation | ||
| IL_28LN_094 | Single bulged C | ||
| IL_28LN_095 | No text annotation | ||
| IL_28LN_096 | Isolated non-canonical cWW pair | ||
| IL_28LN_105 | No text annotation | ||
| IL_28LN_106 | No text annotation | ||
| IL_28LN_107 | No text annotation | ||
| IL_28LN_116 | Single bulged C | ||
| IL_28LN_119 | Multiple bulged bases | ||
| IL_28LN_120 | No text annotation | ||
| IL_28LN_121 | Single bulged U | ||
| IL_28LN_122 | Single bulged C | ||
| IL_28LN_123 | No text annotation | ||
| IL_28LN_124 | Single bulged A | ||
| IL_28LN_125 | Minor groove platform related | ||
| IL_28LN_130 | No text annotation | ||
| IL_28LN_131 | No text annotation | ||
| IL_28LN_134 | No text annotation | ||
| IL_28LN_135 | Single bulged C | ||
| IL_28LN_136 | Single bulged G | ||
| IL_28LN_137 | Isolated cWH basepair | ||
| IL_28LN_138 | Single bulged G | ||
| IL_28LN_146 | Single bulged C | ||
| IL_28LN_163 | Isolated non-canonical cWW pair | ||
| IL_28LN_164 | No text annotation | ||
| IL_28LN_165 | No text annotation | ||
| IL_28LN_173 | Isolated non-canonical cWW pair | ||
| IL_28LN_174 | Kink-turn | ||
| IL_28LN_175 | No text annotation | ||
| IL_28LN_176 | No text annotation | ||
| IL_28LN_186 | Minor groove platform | ||
| IL_28LN_215 | No text annotation | ||
| IL_28LN_217 | No text annotation | ||
| IL_28LN_218 | Single bulged C | ||
| IL_28LN_244 | Isolated non-canonical cWW pair | ||
| IL_28LN_245 | Tandem non-canonical cWW pairs | ||
| IL_28LN_249 | No text annotation | ||
| IL_28LN_250 | No text annotation | ||
| IL_28LN_251 | No text annotation | ||
| IL_28LN_252 | Single bulged C |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_28LN_003 | 1/A2/682:684, 1/A2/918:922, 1/A2/1022:1023 | No text annotation | geometric J3_9H3G_030 J3_01633.3 | |
| J3_28LN_004 | 1/A2/682:684, 1/A2/918:923, 1/A2/1019:1023 | No text annotation | homologous J3_9PN5_031 J3_17385.8 | |
| J3_28LN_005 | 1/A2/685:687, 1/A2/867:874, 1/A2/912:917 | No text annotation | ||
| J3_28LN_007 | 1/A2/938:941, 1/A2/985:993, 1/A2/1000:1004 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_28LN_008 | 1/A2/1094:1096, 1/A2/1136:1140, 1/A2/1147:1151 | No text annotation | homologous J3_9H3G_034 NA | |
| J3_28LN_009 | 1/A2/1218:1221, 1/A2/1645:1651, 1/A2/1673:1680 | No text annotation | homologous J3_9H3G_035 J3_85722.4 | |
| J3_28LN_017 | 1/B5/112:116, 1/B5/155:160, 1/B5/275:278 | No text annotation | homologous J3_8GLP_001 NA | |
| J3_28LN_018 | 1/B5/196:199, 1/B5/215:228, 1/B5/240:244 | No text annotation | ||
| J3_28LN_019 | 1/B5/351:367, 1/B5/374:379, 1/B8/21:24 | No text annotation | homologous J3_8GLP_024 J3_07616.4 | |
| J3_28LN_020 | 1/B5/380:387, 1/B5/414:415, 1/B8/19:20 | No text annotation | geometric J3_8GLP_025 J3_68715.4 | |
| J3_28LN_021 | 1/B5/380:390, 1/B5/401:415, 1/B8/19:20 | No text annotation | homologous J3_8GLP_026 J3_17917.4 | |
| J3_28LN_022 | 1/B5/451:456, 1/B5/700:705, 1/B5/1291:1295 | No text annotation | ||
| J3_28LN_023 | 1/B5/712:713, 1/B5/954:975, 1/B5/1277:1283 | No text annotation | ||
| J3_28LN_024 | 1/B5/1530:1536, 1/B5/1621:1623, 1/B5/1639:1642 | No text annotation | homologous J3_9PN5_008 J3_46658.4 | |
| J3_28LN_025 | 1/B5/1545:1547, 1/B5/1579:1583, 1/B5/1608:1611 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_28LN_026 | 1/B5/1725:1726, 1/B5/1801:1805, 1/B5/1831:1836 | No text annotation | homologous J3_8GLP_029 NA | |
| J3_28LN_028 | 1/B5/2392:2398, 1/B5/2804:2806, 1/B5/2818:2821 | No text annotation | homologous J3_9AXU_013 J3_05025.4 | |
| J3_28LN_029 | 1/B5/2401:2404, 1/B5/2784:2790, 1/B5/2799:2801 | No text annotation | homologous J3_8GLP_005 J3_76012.4 | |
| J3_28LN_030 | 1/B5/2439:2444, 1/B5/2514:2518, 1/B5/2535:2536 | No text annotation | homologous J3_8GLP_030 J3_94309.4 | |
| J3_28LN_031 | 1/B5/2450:2455, 1/B5/2464:2475, 1/B5/2500:2507 | No text annotation | homologous J3_8GLP_031 J3_53783.2 | |
| J3_28LN_032 | 1/B5/2550:2554, 1/B5/2571:2574, 1/B5/2756:2766 | No text annotation | homologous J3_8GLP_006 NA | |
| J3_28LN_033 | 1/B5/2574:2575, 1/B5/2584:2588, 1/B5/2755:2756 | No text annotation | homologous J3_8GLP_032 J3_05348.4 | |
| J3_28LN_034 | 1/B5/2597:2601, 1/B5/2736:2737, 1/B5/2741:2746 | No text annotation | homologous J3_8GLP_033 J3_08594.4 | |
| J3_28LN_035 | 1/B5/3936:3938, 1/B5/4073:4077, 1/B5/4167:4172 | No text annotation | homologous J3_8GLP_007 J3_17460.1 | |
| J3_28LN_036 | 1/B5/4090:4093, 1/B5/4113:4128, 1/B5/4154:4157 | No text annotation | ||
| J3_28LN_037 | 1/B5/4240:4242, 1/B5/4266:4268, 1/B5/4277:4282 | No text annotation | homologous J3_8GLP_009 J3_05327.4 | |
| J3_28LN_038 | 1/B5/4462:4465, 1/B5/4490:4492, 1/B5/4506:4512 | No text annotation | homologous J3_9AXU_023 J3_44047.4 | |
| J3_28LN_039 | 1/B5/4750:4754, 1/B5/4878:4882, 1/B5/4935:4947 | No text annotation | ||
| J3_28LN_040 | 1/B5/4969:4974, 1/B5/4982:4990, 1/B5/5059:5062 | No text annotation | homologous J3_8GLP_011 NA | |
| J3_28LN_041 | 1/B7/9:14, 1/B7/65:66, 1/B7/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.4 | |
| J3_28LN_042 | 1/B8/44:45, 1/B8/58:64, 1/B8/95:99 | No text annotation | homologous J3_8GLP_039 J3_01004.4 | |
| J4_28LN_002 | 1/A2/671:673, 1/A2/1032:1037, 1/A2/1078:1089, 1/A2/1160:1161 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J4_28LN_004 | 1/B5/111:112, 1/B5/278:283, 1/B5/304:310, 1/B5/327:330 | No text annotation | homologous J4_8GLP_001 J4_94698.4 | |
| J4_28LN_005 | 1/B5/196:199, 1/B5/215:222, 1/B5/226:228, 1/B5/240:244 | No text annotation | ||
| J4_28LN_006 | 1/B5/980:982, 1/B5/1069:1071, 1/B5/1239:1242, 1/B5/1267:1272 | No text annotation | homologous J4_8GLP_003 NA | |
| J4_28LN_007 | 1/B5/2364:2370, 1/B5/2388:2390, 1/B5/2823:2828, 1/B5/3855:3856 | No text annotation | homologous J4_8GLP_004 NA | |
| J4_28LN_008 | 1/B5/2405:2409, 1/B5/2433:2438, 1/B5/2537:2538, 1/B5/2776:2783 | No text annotation | homologous J4_8GLP_005 J4_77353.2 | |
| J4_28LN_009 | 1/B5/2408:2409, 1/B5/2433:2438, 1/B5/2537:2538, 1/B5/2776:2782 | No text annotation | homologous J4_8GLP_006 J4_48150.2 | |
| J4_28LN_010 | 1/B5/2617:2618, 1/B5/2636:2641, 1/B5/2691:2697, 1/B5/2717:2718 | No text annotation | homologous J4_8GLP_008 NA | |
| J4_28LN_011 | 1/B5/3633:3637, 1/B5/3649:3653, 1/B5/3689:3693, 1/B5/3820:3825 | No text annotation | homologous J4_8GLP_009 J4_78485.4 | |
| J4_28LN_012 | 1/B5/3695:3697, 1/B5/3751:3752, 1/B5/3770:3779, 1/B5/3813:3818 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_28LN_013 | 1/B5/4230:4234, 1/B5/4288:4290, 1/B5/4317:4318, 1/B5/4327:4329 | No text annotation | homologous J4_8GLP_011 NA | |
| J4_28LN_014 | 1/B5/4230:4234, 1/B5/4288:4292, 1/B5/4316:4318, 1/B5/4327:4329 | No text annotation | homologous J4_9H3G_010 J4_59590.4 | |
| J4_28LN_015 | 1/B5/4586:4589, 1/B5/4619:4620, 1/B5/4675:4677, 1/B5/4711:4714 | No text annotation | homologous J4_8GLP_013 J4_69783.1 | |
| J5_28LN_005 | 1/B5/20:21, 1/B8/35:42, 1/B8/101:106, 1/B8/113:114, 1/B8/136:137 | No text annotation | ||
| J5_28LN_006 | 1/B5/1334:1339, 1/B5/1515:1518, 1/B5/1657:1660, 1/B5/2287:2289, 1/B5/2344:2350 | No text annotation | homologous J5_8GLP_002 J5_08384.4 | |
| J5_28LN_007 | 1/B5/2854:2862, 1/B5/2886:2887, 1/B5/3612:3613, 1/B5/3617:3625, 1/B5/3834:3836 | No text annotation | homologous J5_8GLP_003 J5_99177.4 | |
| J5_28LN_008 | 1/B5/3902:3909, 1/B5/4391:4399, 1/B5/4443:4452, 1/B5/4527:4533, 1/B5/4551:4556 | No text annotation | ||
| J6_28LN_001 | 1/B5/21:26, 1/B5/57:67, 1/B5/74:78, 1/B5/105:109, 1/B5/332:339, 1/B8/33:35 | No text annotation | ||
| J6_28LN_002 | 1/B5/1351:1354, 1/B5/1383:1387, 1/B5/1394:1398, 1/B5/1417:1420, 1/B5/1463:1465, 1/B5/1498:1503 | No text annotation | homologous J6_8GLP_002 NA | |
| J6_28LN_003 | 1/B5/3919:3922, 1/B5/4187:4190, 1/B5/4203:4204, 1/B5/4226:4229, 1/B5/4330:4341, 1/B5/4369:4380 | No text annotation | ||
| J7_28LN_001 | 1/B5/1665:1670, 1/B5/1683:1684, 1/B5/1851:1854, 1/B5/1878:1883, 1/B5/1894:1898, 1/B5/2076:2077, 1/B5/2277:2282 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_28LN_001 | No text annotation | ||
| J3_28LN_002 | No text annotation | ||
| J3_28LN_006 | No text annotation | ||
| J3_28LN_010 | No text annotation | ||
| J3_28LN_011 | No text annotation | ||
| J3_28LN_012 | No text annotation | ||
| J3_28LN_013 | No text annotation | ||
| J3_28LN_014 | No text annotation | ||
| J3_28LN_015 | No text annotation | ||
| J3_28LN_016 | No text annotation | ||
| J3_28LN_027 | No text annotation | ||
| J4_28LN_001 | No text annotation | ||
| J4_28LN_003 | tRNA junction | ||
| J5_28LN_001 | No text annotation | ||
| J5_28LN_002 | No text annotation | ||
| J5_28LN_003 | No text annotation | ||
| J5_28LN_004 | No text annotation |
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