HL_28LN_010

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

28LN|1|A2|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_010 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.1555

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

28LN|1|A2|OMC|462
28LN|1|A2|C|463
28LN|1|A2|A|464
28LN|1|A2|A|465
28LN|1|A2|G|466
28LN|1|A2|G|467

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6