HL_28LN_025

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

28LN|1|A2|U|1300, 28LN|1|A2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_025 not in the Motif Atlas

Homologous match to HL_9PN5_102

Geometric discrepancy: 0.299

The information below is about HL_9PN5_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

28LN|1|A2|A|1295
28LN|1|A2|U|1296
28LN|1|A2|U|1297
28LN|1|A2|G|1298
28LN|1|A2|A|1299
28LN|1|A2|U|1300
28LN|1|A2|A|1301
28LN|1|A2|G|1302
28LN|1|A2|C|1303
28LN|1|A2|U|1304

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein S15

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin