HL_28LN_027

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

28LN|1|A2|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_027 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.1329

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

28LN|1|A2|G|1366
28LN|1|A2|PSU|1367
28LN|1|A2|U|1368
28LN|1|A2|A|1369
28LN|1|A2|A|1370
28LN|1|A2|U|1371
28LN|1|A2|U|1372
28LN|1|A2|C|1373

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AR

40S ribosomal protein S17