HL_28LN_034

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_034 not in the Motif Atlas

Homologous match to HL_9H3G_108

Geometric discrepancy: 0.1533

The information below is about HL_9H3G_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28LN|1|A2|G|1847
28LN|1|A2|U|1848
28LN|1|A2|G|1849
28LN|1|A2|MA6|1850
28LN|1|A2|MA6|1851
28LN|1|A2|C|1852

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA