HL_28LN_035

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG(H2U)AGG(H2U)AG

Length

10 nucleotides

Bulged bases

28LN|1|B2|A|17, 28LN|1|B2|G|18, 28LN|1|B2|G|19, 28LN|1|B2|H2U|20, 28LN|1|B2|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_035 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.2112

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B2|C|13
28LN|1|B2|A|14
28LN|1|B2|G|15
28LN|1|B2|H2U|16
28LN|1|B2|A|17
28LN|1|B2|G|18
28LN|1|B2|G|19
28LN|1|B2|H2U|20
28LN|1|B2|A|21
28LN|1|B2|G|22

Current chains

Chain B2

tRNA-Met-CAT

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

60S ribosomal protein L11