HL_28LN_036
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(PSU)CU(OMC)AU(T6A)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_036 not in the Motif Atlas
- Homologous match to HL_5E6M_002
- Geometric discrepancy: 0.2681
- The information below is about HL_5E6M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55735.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
28LN|1|B2|G|30
28LN|1|B2|PSU|31
28LN|1|B2|C|32
28LN|1|B2|U|33
28LN|1|B2|OMC|34
28LN|1|B2|A|35
28LN|1|B2|U|36
28LN|1|B2|T6A|37
28LN|1|B2|A|38
28LN|1|B2|PSU|39
28LN|1|B2|C|40
Current chains
- Chain B2
- tRNA-Met-CAT
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AP
- 40S ribosomal protein S15
- Chain AQ
- 40S ribosomal protein S16
- Chain B4
- mRNA fragment (6-MER)
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