HL_28LN_038
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 28LN|1|B5|A|39, 28LN|1|B5|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_038 not in the Motif Atlas
- Homologous match to HL_8GLP_001
- Geometric discrepancy: 0.0661
- The information below is about HL_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02262.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 38
Unit IDs
28LN|1|B5|U|37
28LN|1|B5|A|38
28LN|1|B5|A|39
28LN|1|B5|G|40
28LN|1|B5|C|41
28LN|1|B5|A|42
28LN|1|B5|U|43
28LN|1|B5|A|44
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein L13
- Chain BN
- 60S ribosomal protein L15
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Bo
- Large ribosomal subunit protein eL42
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