HL_28LN_040
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_040 not in the Motif Atlas
- Homologous match to HL_9PN5_003
- Geometric discrepancy: 0.1036
- The information below is about HL_9PN5_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.5
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
28LN|1|B5|C|89
28LN|1|B5|G|90
28LN|1|B5|G|91
28LN|1|B5|C|92
28LN|1|B5|G|93
28LN|1|B5|A|94
28LN|1|B5|G|95
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein L13
- Chain BQ
- 60S ribosomal protein L18
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Bo
- Large ribosomal subunit protein eL42
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