HL_28LN_044

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

28LN|1|B5|G|232, 28LN|1|B5|U|233, 28LN|1|B5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_044 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.2621

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

28LN|1|B5|G|230
28LN|1|B5|U|231
28LN|1|B5|G|232
28LN|1|B5|U|233
28LN|1|B5|G|234
28LN|1|B5|A|235
28LN|1|B5|G|236
28LN|1|B5|G|237
28LN|1|B5|C|238

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L4

Chain BY

60S ribosomal protein L26