HL_28LN_050

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

28LN|1|B5|C|1324

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_050 not in the Motif Atlas

Homologous match to HL_9AXU_013

Geometric discrepancy: 0.0734

The information below is about HL_9AXU_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

28LN|1|B5|U|1316
28LN|1|B5|C|1317
28LN|1|B5|U|1318
28LN|1|B5|U|1319
28LN|1|B5|G|1320
28LN|1|B5|1MA|1321
28LN|1|B5|A2M|1322
28LN|1|B5|A|1323
28LN|1|B5|C|1324
28LN|1|B5|A2M|1325

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain Ba

Large ribosomal subunit protein uL15

Chain Be

60S ribosomal protein L32