HL_28LN_056
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_056 not in the Motif Atlas
- Homologous match to HL_9PN5_019
- Geometric discrepancy: 0.1615
- The information below is about HL_9PN5_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
28LN|1|B5|G|1560
28LN|1|B5|G|1561
28LN|1|B5|A|1562
28LN|1|B5|A|1563
28LN|1|B5|A|1564
28LN|1|B5|C|1565
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AN
- 40S ribosomal protein S13
- Chain Bp
- 60S ribosomal protein L37a
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