HL_28LN_059

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

28LN|1|B5|C|1675, 28LN|1|B5|PSU|1676, 28LN|1|B5|C|1677, 28LN|1|B5|A|1678

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_059 not in the Motif Atlas

Homologous match to HL_9PN5_022

Geometric discrepancy: 0.4225

The information below is about HL_9PN5_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

28LN|1|B5|C|1674
28LN|1|B5|C|1675
28LN|1|B5|PSU|1676
28LN|1|B5|C|1677
28LN|1|B5|A|1678
28LN|1|B5|G|1679

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein uL15

Chain Bb

Large ribosomal subunit protein eL29

Chain Bo

Large ribosomal subunit protein eL42