HL_28LN_068

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_068 not in the Motif Atlas

Homologous match to HL_9H3G_035

Geometric discrepancy: 0.137

The information below is about HL_9H3G_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

28LN|1|B5|A|2375
28LN|1|B5|C|2376
28LN|1|B5|G|2377
28LN|1|B5|A|2378
28LN|1|B5|G|2379
28LN|1|B5|A|2380
28LN|1|B5|A|2381
28LN|1|B5|C|2382
28LN|1|B5|U|2383

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

60S ribosomal protein L17

Chain BR

60S ribosomal protein L19

Chain Bd

60S ribosomal protein L31

Chain Bu

Nascent polypeptide-associated complex subunit alpha