HL_28LN_069

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

28LN|1|B5|G|2420, 28LN|1|B5|U|2424

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_069 not in the Motif Atlas

Homologous match to HL_8GLP_034

Geometric discrepancy: 0.107

The information below is about HL_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

28LN|1|B5|A|2419
28LN|1|B5|G|2420
28LN|1|B5|OMC|2421
28LN|1|B5|A|2422
28LN|1|B5|OMG|2423
28LN|1|B5|U|2424
28LN|1|B5|U|2425

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B1

Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form

Chain BP

60S ribosomal protein L17

Chain BR

60S ribosomal protein L19

Chain Bl

60S ribosomal protein L39