HL_28LN_070

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_070 not in the Motif Atlas

Homologous match to HL_8GLP_035

Geometric discrepancy: 0.0622

The information below is about HL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28LN|1|B5|C|2457
28LN|1|B5|G|2458
28LN|1|B5|A|2459
28LN|1|B5|G|2460
28LN|1|B5|C|2461
28LN|1|B5|G|2462

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BN

60S ribosomal protein L15

Chain Bj

Large ribosomal subunit protein eL37