HL_28LN_080

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

28LN|1|B5|C|2813

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_080 not in the Motif Atlas

Homologous match to HL_9PN5_041

Geometric discrepancy: 0.1885

The information below is about HL_9PN5_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28LN|1|B5|U|2809
28LN|1|B5|G|2810
28LN|1|B5|A|2811
28LN|1|B5|A|2812
28LN|1|B5|C|2813
28LN|1|B5|A2M|2814
28LN|1|B5|G|2815

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19