HL_28LN_081

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

28LN|1|B5|U|2873

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_081 not in the Motif Atlas

Homologous match to HL_9PN5_042

Geometric discrepancy: 0.0676

The information below is about HL_9PN5_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

28LN|1|B5|C|2871
28LN|1|B5|U|2872
28LN|1|B5|U|2873
28LN|1|B5|C|2874
28LN|1|B5|OMG|2875
28LN|1|B5|G|2876

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ah

60S ribosomal protein L41

Chain Bp

60S ribosomal protein L37a