HL_28LN_083
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 28LN|1|B5|A|3641, 28LN|1|B5|A|3642, 28LN|1|B5|U|3643, 28LN|1|B5|A|3647
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_083 not in the Motif Atlas
- Homologous match to HL_9H3G_049
- Geometric discrepancy: 0.0985
- The information below is about HL_9H3G_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.4
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 11
Unit IDs
28LN|1|B5|PSU|3638
28LN|1|B5|U|3639
28LN|1|B5|U|3640
28LN|1|B5|A|3641
28LN|1|B5|A|3642
28LN|1|B5|U|3643
28LN|1|B5|U|3644
28LN|1|B5|A|3645
28LN|1|B5|A|3646
28LN|1|B5|A|3647
28LN|1|B5|A|3648
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form
- Chain BA
- Large ribosomal subunit protein uL2
- Chain Bj
- Large ribosomal subunit protein eL37
Coloring options: