HL_28LN_085

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_085 not in the Motif Atlas

Homologous match to HL_9AXU_044

Geometric discrepancy: 0.1668

The information below is about HL_9AXU_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28LN|1|B5|A2M|3723
28LN|1|B5|G|3724
28LN|1|B5|A|3725
28LN|1|B5|A|3726
28LN|1|B5|A|3727
28LN|1|B5|U|3728

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bi

60S ribosomal protein L36

Chain Bo

Large ribosomal subunit protein eL42