HL_28LN_087

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

28LN|1|B5|U|3801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_087 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.1245

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

28LN|1|B5|U|3795
28LN|1|B5|C|3796
28LN|1|B5|U|3797
28LN|1|B5|A|3798
28LN|1|B5|A|3799
28LN|1|B5|U|3800
28LN|1|B5|U|3801
28LN|1|B5|A|3802
28LN|1|B5|G|3803

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

60S ribosomal protein L23