HL_28LN_092
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 28LN|1|B5|A|4213, 28LN|1|B5|C|4220
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_092 not in the Motif Atlas
- Homologous match to HL_8GLP_060
- Geometric discrepancy: 0.0834
- The information below is about HL_8GLP_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.4
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
28LN|1|B5|U|4209
28LN|1|B5|C|4210
28LN|1|B5|A|4211
28LN|1|B5|A|4212
28LN|1|B5|A|4213
28LN|1|B5|C|4214
28LN|1|B5|G|4215
28LN|1|B5|G|4216
28LN|1|B5|U|4217
28LN|1|B5|A|4218
28LN|1|B5|6MZ|4219
28LN|1|B5|C|4220
28LN|1|B5|G|4221
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- 60S ribosomal protein L21
- Chain Bb
- Large ribosomal subunit protein eL29
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