HL_28LN_096

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_096 not in the Motif Atlas

Homologous match to HL_8GLP_064

Geometric discrepancy: 0.0908

The information below is about HL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28LN|1|B5|U|4320
28LN|1|B5|G|4321
28LN|1|B5|A|4322
28LN|1|B5|A|4323
28LN|1|B5|A|4324
28LN|1|B5|G|4325

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

60S ribosomal protein L5

Chain BT

60S ribosomal protein L21

Chain Bo

Large ribosomal subunit protein eL42